Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13315

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
2,979,735	+		QEN71_RS13310	0.81	-1.2
2,980,013	+				-2.3
2,980,013	+				+1.0
2,980,013	+				-0.1
2,980,014	-				-1.0
2,980,014	-				-0.3
2,980,014	-				+0.3
2,980,014	-				-2.1
2,980,014	-				+0.3
2,980,014	-				-1.2
2,980,037	+				+0.3
2,980,037	+				+1.0
2,980,047	-				+0.4
2,980,056	+				-1.0
2,980,056	+				-0.7
2,980,056	+				-0.1
2,980,056	+				+0.5
2,980,057	-				-0.4
2,980,057	-				+0.4
2,980,057	-				-0.4
2,980,057	-				+0.7
2,980,060	+				+1.3
2,980,060	+				-0.2
2,980,060	+				+0.1
2,980,060	+				+1.7
2,980,061	-				-0.3
2,980,061	-				-1.3
2,980,092	-				+0.3
2,980,092	-				-0.9
2,980,103	-				+0.8
2,980,112	-				+0.0
2,980,328	+				-0.1
2,980,338	+				-0.3
2,980,364	+				-0.5
2,980,364	+				-0.4
2,980,364	+				-0.6
2,980,365	-				-0.8
2,980,365	-				-0.4
2,980,365	-				+0.8
2,980,365	-				+0.1
2,980,375	-				-1.5
2,980,375	-				-0.8
2,980,391	-				+0.3
2,980,423	+				+0.2
2,980,424	-				+0.2
2,980,424	-				+0.8
2,980,434	-				+0.2
2,980,499	-				-1.4
2,980,616	+				-1.4
2,980,616	+				-0.4
2,980,616	+				-0.7
2,980,617	-				+0.3
2,980,617	-				+0.5
2,980,669	+				-0.6
2,980,670	-				-1.4
2,980,670	-				+0.8
2,980,670	-				-1.4
2,980,697	+				-0.2
2,980,698	-				-0.2
2,980,698	-				+1.1
2,980,744	+				-3.0
2,980,744	+				-0.1
2,980,744	+				-0.3
2,980,744	+				-0.1
2,980,744	+				-1.7
2,980,744	+				-1.1
2,980,744	+				+1.3
2,980,744	+				-1.0
2,980,759	+				-2.1
2,980,759	+				-0.3
2,980,760	-				-0.2
2,980,760	-				+0.6
2,980,885	+		QEN71_RS13315	0.16	-0.2
2,980,885	+		QEN71_RS13315	0.16	-0.2
2,980,885	+		QEN71_RS13315	0.16	+3.5
2,980,886	-		QEN71_RS13315	0.16	+0.0
2,980,888	+		QEN71_RS13315	0.16	-0.2
2,980,889	-		QEN71_RS13315	0.16	-1.9
2,980,894	+		QEN71_RS13315	0.17	-0.0
2,980,894	+		QEN71_RS13315	0.17	+0.5
2,980,894	+		QEN71_RS13315	0.17	-0.7
2,980,894	+		QEN71_RS13315	0.17	-0.6
2,980,894	+		QEN71_RS13315	0.17	+0.3
2,980,894	+		QEN71_RS13315	0.17	+1.1
2,980,895	-		QEN71_RS13315	0.17	-0.9
2,980,895	-		QEN71_RS13315	0.17	-0.5
2,980,895	-		QEN71_RS13315	0.17	+0.2
2,980,895	-		QEN71_RS13315	0.17	+0.1
2,980,895	-		QEN71_RS13315	0.17	+1.5
2,980,895	-		QEN71_RS13315	0.17	-0.7
2,980,895	-		QEN71_RS13315	0.17	-0.1
2,980,895	-		QEN71_RS13315	0.17	-1.3
2,980,895	-		QEN71_RS13315	0.17	+0.4
2,980,895	-		QEN71_RS13315	0.17	+0.7
2,980,895	-		QEN71_RS13315	0.17	+0.0
2,980,895	-		QEN71_RS13315	0.17	-0.7
2,981,029	+		QEN71_RS13315	0.27	+0.1
2,981,053	+		QEN71_RS13315	0.28	-1.0
2,981,053	+		QEN71_RS13315	0.28	+0.4
2,981,053	+		QEN71_RS13315	0.28	-0.9
2,981,053	+		QEN71_RS13315	0.28	-0.4
2,981,054	-		QEN71_RS13315	0.28	-0.4
2,981,054	-		QEN71_RS13315	0.28	+0.4
2,981,054	-		QEN71_RS13315	0.28	+0.3
2,981,054	-		QEN71_RS13315	0.28	+0.3
2,981,054	-		QEN71_RS13315	0.28	+1.1
2,981,054	-		QEN71_RS13315	0.28	-0.7
2,981,056	+		QEN71_RS13315	0.29	-0.6
2,981,056	+		QEN71_RS13315	0.29	-0.2
2,981,056	+		QEN71_RS13315	0.29	-0.1
2,981,056	+		QEN71_RS13315	0.29	-1.6
2,981,057	-		QEN71_RS13315	0.29	+0.5
2,981,303	-		QEN71_RS13315	0.47	-0.1
2,981,614	+		QEN71_RS13315	0.70	+0.1
2,981,614	+		QEN71_RS13315	0.70	-0.4
2,981,614	+		QEN71_RS13315	0.70	+0.5
2,981,614	+		QEN71_RS13315	0.70	-0.4
2,981,615	-		QEN71_RS13315	0.70	-0.1
2,981,615	-		QEN71_RS13315	0.70	-0.8
2,981,615	-		QEN71_RS13315	0.70	+0.1
2,981,615	-		QEN71_RS13315	0.70	-0.3
2,981,615	-		QEN71_RS13315	0.70	-1.2
2,981,635	+		QEN71_RS13315	0.71	-1.3
2,981,635	+		QEN71_RS13315	0.71	-0.5
2,981,635	+		QEN71_RS13315	0.71	+0.3
2,981,635	+		QEN71_RS13315	0.71	+0.8
2,981,636	-		QEN71_RS13315	0.71	-0.6
2,981,636	-		QEN71_RS13315	0.71	-0.2
2,981,636	-		QEN71_RS13315	0.71	+1.0
2,981,636	-		QEN71_RS13315	0.71	+1.5
2,981,636	-		QEN71_RS13315	0.71	-0.7
2,981,636	-		QEN71_RS13315	0.71	+0.6
2,981,670	-		QEN71_RS13315	0.74	+1.0
2,981,670	-		QEN71_RS13315	0.74	+0.5
2,981,812	+		QEN71_RS13315	0.84	-0.8
2,981,812	+		QEN71_RS13315	0.84	-1.1
2,981,812	+		QEN71_RS13315	0.84	+0.0
2,981,813	-		QEN71_RS13315	0.84	+0.4
2,981,813	-		QEN71_RS13315	0.84	+1.0
2,981,831	+		QEN71_RS13315	0.86	+0.1
2,981,831	+		QEN71_RS13315	0.86	+0.2
2,981,832	-		QEN71_RS13315	0.86	+0.8
2,981,832	-		QEN71_RS13315	0.86	-0.3
2,981,832	-		QEN71_RS13315	0.86	-0.1
2,981,832	-		QEN71_RS13315	0.86	+0.9
2,982,061	+				+0.1
2,982,062	-				+0.7
2,982,183	+				+1.5
2,982,186	-				-0.5
2,982,186	-				-1.5
2,982,186	-				-2.2
2,982,284	+				-0.5
2,982,284	+				-0.8
2,982,284	+				-1.2
2,982,291	+				-0.1
2,982,315	+				-0.4
2,982,315	+				-0.6
2,982,315	+				-0.3
2,982,355	+				+1.1
2,982,355	+				-0.7
2,982,355	+				-1.2
2,982,432	+				-0.2
2,982,433	-				+1.3
2,982,533	+		QEN71_RS13325	0.24	-0.4
2,982,534	-		QEN71_RS13325	0.24	+0.4
2,982,534	-		QEN71_RS13325	0.24	-0.3
2,982,534	-		QEN71_RS13325	0.24	-1.4
2,982,534	-		QEN71_RS13325	0.24	-2.2
2,982,534	-		QEN71_RS13325	0.24	-1.0
2,982,534	-		QEN71_RS13325	0.24	-1.4
2,982,534	-		QEN71_RS13325	0.24	-0.9
2,982,534	-		QEN71_RS13325	0.24	-1.5
2,982,731	+		QEN71_RS13325	0.82	-1.7
2,982,731	+		QEN71_RS13325	0.82	+0.3
2,982,732	-		QEN71_RS13325	0.82	+0.5
2,982,732	-		QEN71_RS13325	0.82	+0.2
2,982,811	+				-0.8
2,982,811	+				+0.4
2,982,811	+				+0.9
2,982,811	+				-0.7
2,982,811	+				-0.7
2,982,812	-				-0.5