Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06825

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06815 and QEN71_RS06820 overlap by 8 nucleotidesQEN71_RS06820 and QEN71_RS06825 overlap by 100 nucleotidesQEN71_RS06825 and QEN71_RS06830 are separated by 85 nucleotides QEN71_RS06815: QEN71_RS06815 - protein mobD, at 1,509,273 to 1,509,965 _RS06815 QEN71_RS06820: QEN71_RS06820 - hypothetical protein, at 1,509,958 to 1,510,731 _RS06820 QEN71_RS06825: QEN71_RS06825 - hypothetical protein, at 1,510,632 to 1,510,877 _RS06825 QEN71_RS06830: QEN71_RS06830 - ParB/RepB/Spo0J family partition protein, at 1,510,963 to 1,513,209 _RS06830 Position (kb) 1510 1511Strain fitness (log2 ratio) -2 -1 0 1 2at 1509.701 kb on - strand, within QEN71_RS06815at 1509.701 kb on - strand, within QEN71_RS06815at 1509.712 kb on + strand, within QEN71_RS06815at 1509.754 kb on - strand, within QEN71_RS06815at 1510.041 kb on + strand, within QEN71_RS06820at 1510.041 kb on + strand, within QEN71_RS06820at 1510.041 kb on + strand, within QEN71_RS06820at 1510.042 kb on - strand, within QEN71_RS06820at 1510.126 kb on + strand, within QEN71_RS06820at 1510.126 kb on + strand, within QEN71_RS06820at 1510.126 kb on + strand, within QEN71_RS06820at 1510.126 kb on + strand, within QEN71_RS06820at 1510.126 kb on + strand, within QEN71_RS06820at 1510.127 kb on - strand, within QEN71_RS06820at 1510.127 kb on - strand, within QEN71_RS06820at 1510.138 kb on + strand, within QEN71_RS06820at 1510.139 kb on - strand, within QEN71_RS06820at 1510.418 kb on + strand, within QEN71_RS06820at 1510.419 kb on - strand, within QEN71_RS06820at 1510.419 kb on - strand, within QEN71_RS06820at 1510.419 kb on - strand, within QEN71_RS06820at 1510.422 kb on + strand, within QEN71_RS06820at 1510.423 kb on - strand, within QEN71_RS06820at 1510.471 kb on + strand, within QEN71_RS06820at 1510.633 kb on + strandat 1510.633 kb on + strandat 1510.633 kb on + strandat 1510.634 kb on - strandat 1510.634 kb on - strandat 1510.783 kb on + strand, within QEN71_RS06825at 1510.783 kb on + strand, within QEN71_RS06825at 1510.783 kb on + strand, within QEN71_RS06825at 1510.784 kb on - strand, within QEN71_RS06825at 1510.816 kb on + strand, within QEN71_RS06825at 1510.816 kb on + strand, within QEN71_RS06825at 1510.817 kb on - strand, within QEN71_RS06825at 1510.817 kb on - strand, within QEN71_RS06825at 1510.888 kb on + strandat 1511.696 kb on + strand, within QEN71_RS06830

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,509,701 - QEN71_RS06815 0.62 +0.4
1,509,701 - QEN71_RS06815 0.62 -0.1
1,509,712 + QEN71_RS06815 0.63 +0.9
1,509,754 - QEN71_RS06815 0.69 -0.9
1,510,041 + QEN71_RS06820 0.11 +1.3
1,510,041 + QEN71_RS06820 0.11 -0.9
1,510,041 + QEN71_RS06820 0.11 +0.6
1,510,042 - QEN71_RS06820 0.11 +0.6
1,510,126 + QEN71_RS06820 0.22 +0.5
1,510,126 + QEN71_RS06820 0.22 -0.5
1,510,126 + QEN71_RS06820 0.22 -0.3
1,510,126 + QEN71_RS06820 0.22 +1.4
1,510,126 + QEN71_RS06820 0.22 +0.8
1,510,127 - QEN71_RS06820 0.22 -0.7
1,510,127 - QEN71_RS06820 0.22 +0.2
1,510,138 + QEN71_RS06820 0.23 -0.5
1,510,139 - QEN71_RS06820 0.23 +0.4
1,510,418 + QEN71_RS06820 0.59 -0.4
1,510,419 - QEN71_RS06820 0.60 -0.5
1,510,419 - QEN71_RS06820 0.60 +1.9
1,510,419 - QEN71_RS06820 0.60 +0.1
1,510,422 + QEN71_RS06820 0.60 -0.5
1,510,423 - QEN71_RS06820 0.60 +0.0
1,510,471 + QEN71_RS06820 0.66 -0.5
1,510,633 + +2.7
1,510,633 + -0.2
1,510,633 + -0.5
1,510,634 - +0.8
1,510,634 - -0.8
1,510,783 + QEN71_RS06825 0.61 -2.2
1,510,783 + QEN71_RS06825 0.61 -0.2
1,510,783 + QEN71_RS06825 0.61 +0.1
1,510,784 - QEN71_RS06825 0.62 -1.6
1,510,816 + QEN71_RS06825 0.75 -0.1
1,510,816 + QEN71_RS06825 0.75 +0.4
1,510,817 - QEN71_RS06825 0.75 -0.4
1,510,817 - QEN71_RS06825 0.75 +0.1
1,510,888 + -1.2
1,511,696 + QEN71_RS06830 0.33 -0.5

Or see this region's nucleotide sequence