Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04305 and QEN71_RS04310 overlap by 4 nucleotides QEN71_RS04310 and QEN71_RS04315 are separated by 83 nucleotides QEN71_RS04315 and QEN71_RS04320 are separated by 547 nucleotides
QEN71_RS04305: QEN71_RS04305 - hypothetical protein, at 948,741 to 949,352
_RS04305
QEN71_RS04310: QEN71_RS04310 - hypothetical protein, at 949,349 to 949,861
_RS04310
QEN71_RS04315: QEN71_RS04315 - hypothetical protein, at 949,945 to 950,427
_RS04315
QEN71_RS04320: QEN71_RS04320 - sigma-54 dependent transcriptional regulator, at 950,975 to 952,369
_RS04320
Position (kb) 949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 949.006 kb on - strand, within QEN71_RS04305 at 949.273 kb on - strand, within QEN71_RS04305 at 949.867 kb on + strand at 949.946 kb on + strand at 949.947 kb on - strand at 949.958 kb on + strand at 949.959 kb on - strand at 949.999 kb on - strand, within QEN71_RS04315 at 949.999 kb on - strand, within QEN71_RS04315 at 949.999 kb on - strand, within QEN71_RS04315 at 950.002 kb on + strand, within QEN71_RS04315 at 950.002 kb on + strand, within QEN71_RS04315 at 950.002 kb on + strand, within QEN71_RS04315 at 950.003 kb on - strand, within QEN71_RS04315 at 950.003 kb on - strand, within QEN71_RS04315 at 950.003 kb on - strand, within QEN71_RS04315 at 950.215 kb on - strand, within QEN71_RS04315 at 950.600 kb on - strand at 950.600 kb on - strand at 950.600 kb on - strand at 950.600 kb on - strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.616 kb on + strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.617 kb on - strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.620 kb on - strand at 950.627 kb on + strand at 950.656 kb on + strand at 950.656 kb on + strand at 950.656 kb on + strand at 950.657 kb on - strand at 950.657 kb on - strand at 950.659 kb on + strand at 950.659 kb on + strand at 950.659 kb on + strand at 950.659 kb on + strand at 950.659 kb on + strand at 950.660 kb on - strand at 950.660 kb on - strand at 950.660 kb on - strand at 950.660 kb on - strand at 950.723 kb on + strand at 950.724 kb on - strand at 950.756 kb on + strand at 950.757 kb on - strand at 950.757 kb on - strand at 950.758 kb on + strand at 950.758 kb on + strand at 950.758 kb on + strand at 950.758 kb on + strand at 950.758 kb on + strand at 950.759 kb on - strand at 950.759 kb on - strand at 950.759 kb on - strand at 950.759 kb on - strand at 950.759 kb on - strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.761 kb on + strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.762 kb on - strand at 950.799 kb on + strand at 950.815 kb on + strand at 950.816 kb on - strand at 950.899 kb on + strand at 950.899 kb on + strand at 950.900 kb on - strand at 950.900 kb on - strand at 950.900 kb on - strand at 950.916 kb on + strand at 950.917 kb on - strand at 950.917 kb on - strand at 950.973 kb on + strand at 950.973 kb on + strand at 950.973 kb on + strand at 950.974 kb on - strand at 950.974 kb on - strand at 950.974 kb on - strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.002 kb on + strand at 951.003 kb on - strand at 951.003 kb on - strand at 951.003 kb on - strand at 951.003 kb on - strand at 951.003 kb on - strand at 951.003 kb on - strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.006 kb on + strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.007 kb on - strand at 951.030 kb on + strand at 951.030 kb on + strand at 951.031 kb on - strand at 951.031 kb on - strand at 951.031 kb on - strand at 951.031 kb on - strand at 951.031 kb on - strand at 951.031 kb on - strand at 951.269 kb on + strand, within QEN71_RS04320 at 951.269 kb on + strand, within QEN71_RS04320 at 951.270 kb on - strand, within QEN71_RS04320 at 951.270 kb on - strand, within QEN71_RS04320 at 951.281 kb on + strand, within QEN71_RS04320 at 951.281 kb on + strand, within QEN71_RS04320 at 951.281 kb on + strand, within QEN71_RS04320 at 951.282 kb on - strand, within QEN71_RS04320 at 951.282 kb on - strand, within QEN71_RS04320 at 951.282 kb on - strand, within QEN71_RS04320 at 951.282 kb on - strand, within QEN71_RS04320 at 951.282 kb on - strand, within QEN71_RS04320 at 951.296 kb on + strand, within QEN71_RS04320 at 951.296 kb on + strand, within QEN71_RS04320 at 951.297 kb on - strand, within QEN71_RS04320 at 951.335 kb on + strand, within QEN71_RS04320 at 951.335 kb on + strand, within QEN71_RS04320 at 951.336 kb on - strand, within QEN71_RS04320
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 949,006 - QEN71_RS04305 0.43 +0.1 949,273 - QEN71_RS04305 0.87 +0.0 949,867 + -0.4 949,946 + -1.3 949,947 - +1.8 949,958 + -0.1 949,959 - +0.0 949,999 - QEN71_RS04315 0.11 -0.1 949,999 - QEN71_RS04315 0.11 -1.9 949,999 - QEN71_RS04315 0.11 -0.3 950,002 + QEN71_RS04315 0.12 -0.2 950,002 + QEN71_RS04315 0.12 -1.3 950,002 + QEN71_RS04315 0.12 +0.1 950,003 - QEN71_RS04315 0.12 +0.5 950,003 - QEN71_RS04315 0.12 +0.3 950,003 - QEN71_RS04315 0.12 -2.8 950,215 - QEN71_RS04315 0.56 -0.4 950,600 - +0.3 950,600 - -0.9 950,600 - -0.4 950,600 - -0.1 950,616 + +0.7 950,616 + -0.9 950,616 + -1.5 950,616 + -0.1 950,616 + -0.6 950,616 + +0.1 950,616 + -0.8 950,616 + -0.2 950,617 - -0.4 950,617 - -0.2 950,617 - -0.9 950,617 - -0.1 950,617 - +0.1 950,617 - +0.0 950,617 - +0.5 950,617 - -1.0 950,619 + -0.3 950,619 + -1.4 950,619 + +0.1 950,619 + +0.2 950,620 - -0.9 950,627 + -0.9 950,656 + -1.8 950,656 + +0.6 950,656 + +0.3 950,657 - +0.6 950,657 - +0.5 950,659 + -1.2 950,659 + -1.4 950,659 + +0.1 950,659 + +0.5 950,659 + -0.8 950,660 - +0.5 950,660 - +0.8 950,660 - +0.3 950,660 - -0.8 950,723 + -1.5 950,724 - -0.9 950,756 + -0.3 950,757 - -0.6 950,757 - -0.1 950,758 + -0.2 950,758 + -0.4 950,758 + -0.4 950,758 + -0.0 950,758 + +0.7 950,759 - -0.5 950,759 - -0.1 950,759 - -0.3 950,759 - -1.4 950,759 - -0.5 950,761 + -1.4 950,761 + -1.1 950,761 + +2.2 950,761 + -0.8 950,761 + -0.5 950,761 + +0.7 950,761 + +0.5 950,761 + +1.3 950,762 - -0.3 950,762 - +0.5 950,762 - +0.1 950,762 - -1.0 950,762 - -0.3 950,762 - -0.8 950,762 - +0.8 950,762 - -0.8 950,762 - +0.9 950,762 - -1.6 950,762 - -1.2 950,762 - -0.8 950,799 + +0.8 950,815 + -0.0 950,816 - -0.5 950,899 + -1.0 950,899 + +1.1 950,900 - -0.8 950,900 - +0.3 950,900 - -0.5 950,916 + +1.9 950,917 - +0.2 950,917 - +0.6 950,973 + -0.1 950,973 + -0.4 950,973 + +0.9 950,974 - -0.3 950,974 - +1.6 950,974 - +0.2 951,002 + -0.5 951,002 + +0.2 951,002 + -0.7 951,002 + +0.2 951,002 + -0.5 951,002 + -0.6 951,002 + -0.2 951,002 + -0.4 951,003 - +0.0 951,003 - -0.1 951,003 - -0.0 951,003 - -0.2 951,003 - +0.4 951,003 - -0.4 951,006 + -0.4 951,006 + +0.3 951,006 + +0.8 951,006 + +0.4 951,006 + +0.2 951,006 + +1.1 951,006 + -0.7 951,006 + -0.7 951,006 + +0.6 951,007 - -0.3 951,007 - +0.5 951,007 - -1.4 951,007 - +0.3 951,007 - +0.7 951,007 - -0.4 951,007 - -2.8 951,007 - -0.8 951,030 + -1.0 951,030 + +0.4 951,031 - -0.4 951,031 - +0.1 951,031 - +0.3 951,031 - -1.4 951,031 - +1.3 951,031 - -0.3 951,269 + QEN71_RS04320 0.21 +0.0 951,269 + QEN71_RS04320 0.21 -2.1 951,270 - QEN71_RS04320 0.21 -0.1 951,270 - QEN71_RS04320 0.21 -0.1 951,281 + QEN71_RS04320 0.22 +0.8 951,281 + QEN71_RS04320 0.22 -0.5 951,281 + QEN71_RS04320 0.22 +0.0 951,282 - QEN71_RS04320 0.22 -0.0 951,282 - QEN71_RS04320 0.22 -0.5 951,282 - QEN71_RS04320 0.22 +0.4 951,282 - QEN71_RS04320 0.22 +0.1 951,282 - QEN71_RS04320 0.22 -0.1 951,296 + QEN71_RS04320 0.23 +0.7 951,296 + QEN71_RS04320 0.23 -1.0 951,297 - QEN71_RS04320 0.23 -1.0 951,335 + QEN71_RS04320 0.26 +0.6 951,335 + QEN71_RS04320 0.26 +1.9 951,336 - QEN71_RS04320 0.26 -0.6
Or see this region's nucleotide sequence