Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04075 and QEN71_RS04080 are separated by 51 nucleotides QEN71_RS04080 and QEN71_RS04085 are separated by 17 nucleotides
QEN71_RS04075: QEN71_RS04075 - histidinol-phosphate transaminase, at 902,580 to 903,695
_RS04075
QEN71_RS04080: QEN71_RS04080 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 903,747 to 904,709
_RS04080
QEN71_RS04085: QEN71_RS04085 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 904,727 to 906,031
_RS04085
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.823 kb on + strand, within QEN71_RS04075 at 902.823 kb on + strand, within QEN71_RS04075 at 902.823 kb on + strand, within QEN71_RS04075 at 902.823 kb on + strand, within QEN71_RS04075 at 902.823 kb on + strand, within QEN71_RS04075 at 902.823 kb on + strand, within QEN71_RS04075 at 902.931 kb on + strand, within QEN71_RS04075 at 902.931 kb on + strand, within QEN71_RS04075 at 902.931 kb on + strand, within QEN71_RS04075 at 902.946 kb on + strand, within QEN71_RS04075 at 902.946 kb on + strand, within QEN71_RS04075 at 902.946 kb on + strand, within QEN71_RS04075 at 902.946 kb on + strand, within QEN71_RS04075 at 902.946 kb on + strand, within QEN71_RS04075 at 903.003 kb on + strand, within QEN71_RS04075 at 903.003 kb on + strand, within QEN71_RS04075 at 903.168 kb on + strand, within QEN71_RS04075 at 903.168 kb on + strand, within QEN71_RS04075 at 903.177 kb on + strand, within QEN71_RS04075 at 903.177 kb on + strand, within QEN71_RS04075 at 903.177 kb on + strand, within QEN71_RS04075 at 903.438 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.480 kb on + strand, within QEN71_RS04075 at 903.593 kb on + strand at 903.593 kb on + strand at 903.593 kb on + strand at 903.593 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.597 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.699 kb on + strand at 903.847 kb on + strand, within QEN71_RS04080 at 903.847 kb on + strand, within QEN71_RS04080 at 903.847 kb on + strand, within QEN71_RS04080 at 903.847 kb on + strand, within QEN71_RS04080 at 903.847 kb on + strand, within QEN71_RS04080 at 904.206 kb on + strand, within QEN71_RS04080 at 904.206 kb on + strand, within QEN71_RS04080 at 904.206 kb on + strand, within QEN71_RS04080 at 904.206 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.268 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.539 kb on + strand, within QEN71_RS04080 at 904.540 kb on + strand, within QEN71_RS04080 at 904.606 kb on + strand, within QEN71_RS04080 at 904.606 kb on + strand, within QEN71_RS04080 at 904.707 kb on + strand at 904.707 kb on + strand at 904.707 kb on + strand at 904.812 kb on + strand at 904.812 kb on + strand at 904.812 kb on + strand at 905.077 kb on + strand, within QEN71_RS04085 at 905.077 kb on + strand, within QEN71_RS04085 at 905.077 kb on + strand, within QEN71_RS04085 at 905.077 kb on + strand, within QEN71_RS04085 at 905.077 kb on + strand, within QEN71_RS04085 at 905.173 kb on + strand, within QEN71_RS04085 at 905.173 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.330 kb on + strand, within QEN71_RS04085 at 905.423 kb on + strand, within QEN71_RS04085 at 905.474 kb on + strand, within QEN71_RS04085 at 905.474 kb on + strand, within QEN71_RS04085 at 905.474 kb on + strand, within QEN71_RS04085 at 905.474 kb on + strand, within QEN71_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 902,823 + QEN71_RS04075 0.22 -0.1 902,823 + QEN71_RS04075 0.22 -0.3 902,823 + QEN71_RS04075 0.22 -1.9 902,823 + QEN71_RS04075 0.22 -0.6 902,823 + QEN71_RS04075 0.22 +0.3 902,823 + QEN71_RS04075 0.22 -0.2 902,931 + QEN71_RS04075 0.31 -0.2 902,931 + QEN71_RS04075 0.31 +0.7 902,931 + QEN71_RS04075 0.31 -1.9 902,946 + QEN71_RS04075 0.33 -0.7 902,946 + QEN71_RS04075 0.33 +0.9 902,946 + QEN71_RS04075 0.33 -0.2 902,946 + QEN71_RS04075 0.33 -0.2 902,946 + QEN71_RS04075 0.33 +0.6 903,003 + QEN71_RS04075 0.38 +1.1 903,003 + QEN71_RS04075 0.38 -0.2 903,168 + QEN71_RS04075 0.53 +1.7 903,168 + QEN71_RS04075 0.53 -0.7 903,177 + QEN71_RS04075 0.53 +0.7 903,177 + QEN71_RS04075 0.53 -0.1 903,177 + QEN71_RS04075 0.53 +0.9 903,438 + QEN71_RS04075 0.77 +0.6 903,480 + QEN71_RS04075 0.81 -0.8 903,480 + QEN71_RS04075 0.81 +1.0 903,480 + QEN71_RS04075 0.81 -0.4 903,480 + QEN71_RS04075 0.81 +0.3 903,480 + QEN71_RS04075 0.81 +0.5 903,480 + QEN71_RS04075 0.81 +1.1 903,593 + -0.1 903,593 + -0.3 903,593 + -1.8 903,593 + +2.3 903,597 + +2.3 903,597 + +1.1 903,597 + +2.1 903,597 + +1.4 903,597 + +0.2 903,597 + -0.0 903,597 + -0.4 903,597 + -2.5 903,597 + +0.1 903,597 + +0.2 903,597 + +0.4 903,597 + -1.1 903,597 + -2.9 903,597 + +0.2 903,597 + +0.4 903,597 + +0.6 903,597 + +0.3 903,597 + -0.6 903,597 + +0.6 903,597 + +0.5 903,597 + +1.6 903,597 + -0.7 903,597 + +0.7 903,597 + -1.3 903,597 + -0.4 903,597 + -0.5 903,597 + -0.3 903,699 + +0.0 903,699 + +0.1 903,699 + +1.9 903,699 + -0.4 903,699 + +2.2 903,699 + +0.5 903,699 + +0.2 903,847 + QEN71_RS04080 0.10 -2.3 903,847 + QEN71_RS04080 0.10 -1.7 903,847 + QEN71_RS04080 0.10 -1.4 903,847 + QEN71_RS04080 0.10 -0.1 903,847 + QEN71_RS04080 0.10 -1.0 904,206 + QEN71_RS04080 0.48 -3.5 904,206 + QEN71_RS04080 0.48 -0.9 904,206 + QEN71_RS04080 0.48 -1.9 904,206 + QEN71_RS04080 0.48 -0.7 904,268 + QEN71_RS04080 0.54 -1.6 904,268 + QEN71_RS04080 0.54 -2.1 904,268 + QEN71_RS04080 0.54 -1.2 904,268 + QEN71_RS04080 0.54 -1.9 904,268 + QEN71_RS04080 0.54 -1.3 904,268 + QEN71_RS04080 0.54 -1.9 904,268 + QEN71_RS04080 0.54 +0.3 904,539 + QEN71_RS04080 0.82 -1.3 904,539 + QEN71_RS04080 0.82 -1.0 904,539 + QEN71_RS04080 0.82 -0.4 904,539 + QEN71_RS04080 0.82 -1.8 904,539 + QEN71_RS04080 0.82 -2.2 904,539 + QEN71_RS04080 0.82 -2.6 904,540 + QEN71_RS04080 0.82 +0.1 904,606 + QEN71_RS04080 0.89 -0.4 904,606 + QEN71_RS04080 0.89 -2.6 904,707 + +0.8 904,707 + -0.6 904,707 + +0.6 904,812 + -3.0 904,812 + -3.5 904,812 + -2.1 905,077 + QEN71_RS04085 0.27 -2.1 905,077 + QEN71_RS04085 0.27 -2.8 905,077 + QEN71_RS04085 0.27 -4.1 905,077 + QEN71_RS04085 0.27 +0.2 905,077 + QEN71_RS04085 0.27 -1.2 905,173 + QEN71_RS04085 0.34 -4.1 905,173 + QEN71_RS04085 0.34 -3.4 905,330 + QEN71_RS04085 0.46 -1.1 905,330 + QEN71_RS04085 0.46 -2.8 905,330 + QEN71_RS04085 0.46 -1.7 905,330 + QEN71_RS04085 0.46 -0.5 905,330 + QEN71_RS04085 0.46 -2.8 905,330 + QEN71_RS04085 0.46 -4.2 905,330 + QEN71_RS04085 0.46 -2.7 905,423 + QEN71_RS04085 0.53 -0.1 905,474 + QEN71_RS04085 0.57 -2.6 905,474 + QEN71_RS04085 0.57 -4.0 905,474 + QEN71_RS04085 0.57 -3.1 905,474 + QEN71_RS04085 0.57 -2.2
Or see this region's nucleotide sequence