Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03695 and QEN71_RS03700 are separated by 408 nucleotides QEN71_RS03700 and QEN71_RS03705 are separated by 324 nucleotides
QEN71_RS03695: QEN71_RS03695 - hypothetical protein, at 821,323 to 821,565
_RS03695
QEN71_RS03700: QEN71_RS03700 - cold-shock protein, at 821,974 to 822,177
_RS03700
QEN71_RS03705: QEN71_RS03705 - exonuclease domain-containing protein, at 822,502 to 823,680
_RS03705
Position (kb) 821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 821.053 kb on + strand at 821.053 kb on + strand at 821.053 kb on + strand at 821.053 kb on + strand at 821.053 kb on + strand at 821.054 kb on - strand at 821.054 kb on - strand at 821.054 kb on - strand at 821.054 kb on - strand at 821.054 kb on - strand at 821.054 kb on - strand at 821.082 kb on + strand at 821.082 kb on + strand at 821.082 kb on + strand at 821.083 kb on - strand at 821.083 kb on - strand at 821.083 kb on - strand at 821.151 kb on - strand at 821.153 kb on + strand at 821.153 kb on + strand at 821.154 kb on - strand at 821.195 kb on + strand at 821.195 kb on + strand at 821.195 kb on + strand at 821.195 kb on + strand at 821.195 kb on + strand at 821.196 kb on - strand at 821.196 kb on - strand at 821.196 kb on - strand at 821.196 kb on - strand at 821.198 kb on - strand at 821.198 kb on - strand at 821.198 kb on - strand at 821.198 kb on - strand at 821.302 kb on + strand at 821.302 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.310 kb on + strand at 821.311 kb on - strand at 821.311 kb on - strand at 821.311 kb on - strand at 821.311 kb on - strand at 821.311 kb on - strand at 821.311 kb on - strand at 821.312 kb on + strand at 821.312 kb on + strand at 821.312 kb on + strand at 821.312 kb on + strand at 821.312 kb on + strand at 821.313 kb on - strand at 821.313 kb on - strand at 821.313 kb on - strand at 821.313 kb on - strand at 821.313 kb on - strand at 821.313 kb on - strand at 821.324 kb on + strand at 821.324 kb on + strand at 821.324 kb on + strand at 821.324 kb on + strand at 821.325 kb on - strand at 821.325 kb on - strand at 821.325 kb on - strand at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.396 kb on + strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.397 kb on - strand, within QEN71_RS03695 at 821.621 kb on + strand at 821.621 kb on + strand at 821.621 kb on + strand at 821.622 kb on - strand at 821.622 kb on - strand at 821.622 kb on - strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.661 kb on - strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.715 kb on + strand at 821.716 kb on - strand at 821.747 kb on + strand at 821.747 kb on + strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.751 kb on - strand at 821.771 kb on + strand at 821.771 kb on + strand at 821.772 kb on - strand at 821.839 kb on + strand at 821.840 kb on - strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.875 kb on + strand at 821.875 kb on + strand at 821.875 kb on + strand at 821.876 kb on - strand at 821.876 kb on - strand at 821.878 kb on + strand at 821.892 kb on + strand at 821.893 kb on - strand at 821.895 kb on - strand at 821.950 kb on + strand at 821.950 kb on + strand at 821.951 kb on - strand at 822.009 kb on + strand, within QEN71_RS03700 at 822.009 kb on + strand, within QEN71_RS03700 at 822.009 kb on + strand, within QEN71_RS03700 at 822.010 kb on - strand, within QEN71_RS03700 at 822.175 kb on + strand at 822.175 kb on + strand at 822.175 kb on + strand at 822.176 kb on - strand at 822.176 kb on - strand at 822.206 kb on + strand at 822.206 kb on + strand at 822.207 kb on - strand at 822.207 kb on - strand at 822.207 kb on - strand at 822.254 kb on + strand at 822.276 kb on + strand at 822.276 kb on + strand at 822.277 kb on - strand at 822.277 kb on - strand at 822.277 kb on - strand at 822.278 kb on + strand at 822.278 kb on + strand at 822.278 kb on + strand at 822.279 kb on - strand at 822.329 kb on + strand at 822.330 kb on - strand at 822.332 kb on + strand at 822.333 kb on - strand at 822.333 kb on - strand at 822.360 kb on + strand at 822.361 kb on - strand at 822.361 kb on - strand at 822.364 kb on + strand at 822.372 kb on + strand at 822.372 kb on + strand at 822.372 kb on + strand at 822.373 kb on - strand at 822.373 kb on - strand at 822.381 kb on + strand at 822.381 kb on + strand at 822.381 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.896 kb on + strand, within QEN71_RS03705 at 822.896 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.004 kb on - strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.148 kb on - strand, within QEN71_RS03705 at 823.148 kb on - strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 821,053 + -1.1 821,053 + -1.2 821,053 + -0.6 821,053 + -0.9 821,053 + +0.5 821,054 - +0.2 821,054 - +1.4 821,054 - -0.2 821,054 - +1.5 821,054 - -0.1 821,054 - -0.8 821,082 + +0.7 821,082 + -0.4 821,082 + +1.3 821,083 - +0.6 821,083 - -0.1 821,083 - -1.3 821,151 - +2.2 821,153 + +0.6 821,153 + +0.5 821,154 - -1.5 821,195 + -0.1 821,195 + +0.3 821,195 + -1.5 821,195 + -2.3 821,195 + -0.4 821,196 - +0.1 821,196 - -0.5 821,196 - -0.0 821,196 - +1.0 821,198 - +1.0 821,198 - -2.8 821,198 - +1.4 821,198 - -1.0 821,302 + -1.7 821,302 + -1.7 821,310 + -0.1 821,310 + +0.9 821,310 + -0.4 821,310 + -0.2 821,310 + +0.5 821,310 + -0.7 821,310 + -0.7 821,311 - +0.7 821,311 - -0.3 821,311 - -0.5 821,311 - +0.6 821,311 - +0.1 821,311 - -0.7 821,312 + +0.4 821,312 + -1.4 821,312 + +0.6 821,312 + -1.1 821,312 + -0.1 821,313 - -0.7 821,313 - +0.9 821,313 - +0.8 821,313 - +0.1 821,313 - +0.3 821,313 - -0.3 821,324 + -0.3 821,324 + -1.8 821,324 + -0.4 821,324 + -0.3 821,325 - +1.5 821,325 - -0.6 821,325 - +0.5 821,396 + QEN71_RS03695 0.30 -1.0 821,396 + QEN71_RS03695 0.30 +0.4 821,396 + QEN71_RS03695 0.30 +0.5 821,396 + QEN71_RS03695 0.30 +0.9 821,396 + QEN71_RS03695 0.30 +0.8 821,396 + QEN71_RS03695 0.30 +0.2 821,396 + QEN71_RS03695 0.30 +0.4 821,396 + QEN71_RS03695 0.30 -0.2 821,396 + QEN71_RS03695 0.30 -0.7 821,396 + QEN71_RS03695 0.30 -1.3 821,396 + QEN71_RS03695 0.30 +1.0 821,396 + QEN71_RS03695 0.30 -0.4 821,396 + QEN71_RS03695 0.30 -0.2 821,396 + QEN71_RS03695 0.30 -1.3 821,397 - QEN71_RS03695 0.30 -1.3 821,397 - QEN71_RS03695 0.30 -1.3 821,397 - QEN71_RS03695 0.30 -1.4 821,397 - QEN71_RS03695 0.30 -0.4 821,397 - QEN71_RS03695 0.30 +0.1 821,397 - QEN71_RS03695 0.30 +0.2 821,397 - QEN71_RS03695 0.30 +0.2 821,397 - QEN71_RS03695 0.30 -0.4 821,397 - QEN71_RS03695 0.30 +0.8 821,621 + +1.2 821,621 + +0.9 821,621 + -0.7 821,622 - -0.6 821,622 - +0.5 821,622 - +1.0 821,641 + +0.2 821,641 + -0.6 821,641 + -0.4 821,641 + -0.8 821,641 + -1.7 821,641 + -0.1 821,642 - -1.5 821,642 - +0.5 821,642 - +0.0 821,642 - +0.6 821,642 - -0.2 821,642 - -0.3 821,642 - -0.3 821,642 - -0.7 821,661 - +0.7 821,696 + -0.6 821,696 + -0.6 821,696 + -0.2 821,696 + -1.1 821,696 + -0.8 821,696 + +0.2 821,696 + -0.6 821,696 + -0.6 821,697 - -1.4 821,697 - -1.5 821,697 - -0.7 821,697 - -0.2 821,697 - -0.3 821,715 + -0.7 821,716 - -1.6 821,747 + -0.5 821,747 + +0.1 821,748 - -1.1 821,748 - -0.4 821,748 - -0.6 821,748 - -0.4 821,751 - -0.2 821,771 + -0.9 821,771 + -0.6 821,772 - -0.4 821,839 + +0.0 821,840 - +0.4 821,841 + -0.4 821,841 + +0.4 821,841 + +0.7 821,841 + +0.0 821,841 + +2.1 821,841 + +0.5 821,841 + +0.3 821,842 - +1.2 821,842 - -0.2 821,842 - +0.7 821,842 - -0.1 821,875 + -0.7 821,875 + -0.2 821,875 + -0.4 821,876 - -1.6 821,876 - +1.5 821,878 + -2.9 821,892 + +0.2 821,893 - -0.6 821,895 - -0.4 821,950 + +0.3 821,950 + -0.5 821,951 - +0.4 822,009 + QEN71_RS03700 0.17 +0.9 822,009 + QEN71_RS03700 0.17 -1.3 822,009 + QEN71_RS03700 0.17 -0.1 822,010 - QEN71_RS03700 0.18 -1.8 822,175 + -0.6 822,175 + +0.6 822,175 + +0.7 822,176 - -0.1 822,176 - -1.3 822,206 + +0.6 822,206 + +0.4 822,207 - -1.3 822,207 - -0.4 822,207 - +1.9 822,254 + +1.6 822,276 + -1.6 822,276 + -0.6 822,277 - +0.6 822,277 - +0.2 822,277 - +0.3 822,278 + -1.3 822,278 + -1.7 822,278 + -0.1 822,279 - -0.1 822,329 + -1.0 822,330 - +0.3 822,332 + -1.3 822,333 - +0.1 822,333 - -2.1 822,360 + +0.7 822,361 - +0.6 822,361 - -0.4 822,364 + -0.0 822,372 + +1.6 822,372 + -0.7 822,372 + +0.3 822,373 - +0.3 822,373 - +0.2 822,381 + +0.9 822,381 + +1.5 822,381 + -0.0 822,466 + -1.7 822,466 + +0.4 822,466 + -0.6 822,466 + +1.2 822,466 + +0.1 822,466 + +2.2 822,466 + +1.2 822,466 + -0.1 822,466 + -1.1 822,466 + -0.2 822,466 + -0.8 822,466 + +0.6 822,466 + -0.1 822,467 - -0.2 822,467 - +0.2 822,467 - -0.9 822,467 - -0.2 822,467 - +0.2 822,467 - +0.7 822,467 - -1.3 822,467 - +0.6 822,873 + QEN71_RS03705 0.31 -0.9 822,873 + QEN71_RS03705 0.31 -0.8 822,873 + QEN71_RS03705 0.31 +0.4 822,873 + QEN71_RS03705 0.31 +0.4 822,874 - QEN71_RS03705 0.32 +0.9 822,874 - QEN71_RS03705 0.32 -0.2 822,874 - QEN71_RS03705 0.32 +0.4 822,896 + QEN71_RS03705 0.33 +0.9 822,896 + QEN71_RS03705 0.33 +0.1 823,003 + QEN71_RS03705 0.42 -0.4 823,003 + QEN71_RS03705 0.42 -0.8 823,003 + QEN71_RS03705 0.42 -0.2 823,004 - QEN71_RS03705 0.43 -0.9 823,138 + QEN71_RS03705 0.54 -1.9 823,138 + QEN71_RS03705 0.54 -0.5 823,138 + QEN71_RS03705 0.54 -0.6 823,138 + QEN71_RS03705 0.54 -1.9 823,138 + QEN71_RS03705 0.54 -0.1 823,138 + QEN71_RS03705 0.54 -0.1 823,138 + QEN71_RS03705 0.54 -1.0 823,138 + QEN71_RS03705 0.54 -0.4 823,138 + QEN71_RS03705 0.54 -1.4 823,139 - QEN71_RS03705 0.54 +0.9 823,139 - QEN71_RS03705 0.54 -0.4 823,139 - QEN71_RS03705 0.54 +0.2 823,139 - QEN71_RS03705 0.54 -0.1 823,139 - QEN71_RS03705 0.54 -0.6 823,139 - QEN71_RS03705 0.54 +0.2 823,139 - QEN71_RS03705 0.54 -0.9 823,139 - QEN71_RS03705 0.54 -0.6 823,147 + QEN71_RS03705 0.55 -1.2 823,147 + QEN71_RS03705 0.55 -0.2 823,147 + QEN71_RS03705 0.55 -0.1 823,147 + QEN71_RS03705 0.55 +0.5 823,147 + QEN71_RS03705 0.55 -0.8 823,148 - QEN71_RS03705 0.55 +1.3 823,148 - QEN71_RS03705 0.55 -0.4 823,171 + QEN71_RS03705 0.57 -0.5 823,171 + QEN71_RS03705 0.57 +0.9 823,171 + QEN71_RS03705 0.57 -0.9 823,171 + QEN71_RS03705 0.57 -0.4 823,171 + QEN71_RS03705 0.57 +0.6 823,171 + QEN71_RS03705 0.57 +0.1 823,171 + QEN71_RS03705 0.57 -0.5 823,172 - QEN71_RS03705 0.57 -1.2 823,172 - QEN71_RS03705 0.57 +0.7 823,172 - QEN71_RS03705 0.57 -1.1 823,172 - QEN71_RS03705 0.57 -0.5 823,172 - QEN71_RS03705 0.57 +0.4 823,175 + QEN71_RS03705 0.57 -1.5 823,175 + QEN71_RS03705 0.57 +0.6 823,175 + QEN71_RS03705 0.57 -0.4 823,175 + QEN71_RS03705 0.57 -1.8 823,175 + QEN71_RS03705 0.57 -0.5 823,175 + QEN71_RS03705 0.57 -0.4 823,175 + QEN71_RS03705 0.57 -0.4 823,175 + QEN71_RS03705 0.57 +1.6 823,175 + QEN71_RS03705 0.57 -0.3 823,175 + QEN71_RS03705 0.57 +0.3 823,175 + QEN71_RS03705 0.57 -0.8 823,176 - QEN71_RS03705 0.57 -0.4 823,176 - QEN71_RS03705 0.57 -0.4 823,176 - QEN71_RS03705 0.57 +0.7 823,176 - QEN71_RS03705 0.57 +0.5 823,176 - QEN71_RS03705 0.57 -0.8 823,176 - QEN71_RS03705 0.57 +0.2 823,176 - QEN71_RS03705 0.57 +0.4
Or see this region's nucleotide sequence