Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03410 and QEN71_RS03415 are separated by 309 nucleotides QEN71_RS03415 and QEN71_RS03420 are separated by 91 nucleotides
QEN71_RS03410: QEN71_RS03410 - putative hydroxymethylpyrimidine transporter CytX, at 759,492 to 760,808
_RS03410
QEN71_RS03415: QEN71_RS03415 - replication-associated recombination protein A, at 761,118 to 762,428
_RS03415
QEN71_RS03420: QEN71_RS03420 - serine--tRNA ligase, at 762,520 to 763,818
_RS03420
Position (kb) 761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 760.123 kb on + strand, within QEN71_RS03410 at 760.123 kb on + strand, within QEN71_RS03410 at 760.124 kb on - strand, within QEN71_RS03410 at 760.252 kb on + strand, within QEN71_RS03410 at 760.252 kb on + strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.862 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.875 kb on - strand at 760.893 kb on + strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.927 kb on + strand at 760.927 kb on + strand at 760.928 kb on - strand at 760.928 kb on - strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.969 kb on - strand at 760.969 kb on - strand at 760.969 kb on - strand at 761.083 kb on + strand at 761.103 kb on + strand at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.726 kb on + strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.844 kb on + strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.845 kb on - strand, within QEN71_RS03415 at 761.904 kb on + strand, within QEN71_RS03415 at 761.904 kb on + strand, within QEN71_RS03415 at 761.905 kb on - strand, within QEN71_RS03415 at 761.946 kb on + strand, within QEN71_RS03415 at 761.946 kb on + strand, within QEN71_RS03415 at 761.946 kb on + strand, within QEN71_RS03415 at 761.947 kb on - strand, within QEN71_RS03415 at 761.947 kb on - strand, within QEN71_RS03415 at 762.039 kb on + strand, within QEN71_RS03415 at 762.039 kb on + strand, within QEN71_RS03415 at 762.039 kb on + strand, within QEN71_RS03415 at 762.039 kb on + strand, within QEN71_RS03415 at 762.040 kb on - strand, within QEN71_RS03415 at 762.040 kb on - strand, within QEN71_RS03415 at 762.093 kb on + strand, within QEN71_RS03415 at 762.093 kb on + strand, within QEN71_RS03415 at 762.093 kb on + strand, within QEN71_RS03415 at 762.093 kb on + strand, within QEN71_RS03415 at 762.093 kb on + strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.094 kb on - strand, within QEN71_RS03415 at 762.126 kb on + strand, within QEN71_RS03415 at 762.126 kb on + strand, within QEN71_RS03415 at 762.135 kb on + strand, within QEN71_RS03415 at 762.136 kb on - strand, within QEN71_RS03415 at 762.136 kb on - strand, within QEN71_RS03415 at 762.243 kb on + strand, within QEN71_RS03415 at 762.244 kb on - strand, within QEN71_RS03415 at 762.273 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.291 kb on + strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.292 kb on - strand, within QEN71_RS03415 at 762.324 kb on + strand at 762.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 760,123 + QEN71_RS03410 0.48 +1.0 760,123 + QEN71_RS03410 0.48 +0.6 760,124 - QEN71_RS03410 0.48 -1.1 760,252 + QEN71_RS03410 0.58 +1.1 760,252 + QEN71_RS03410 0.58 -1.4 760,253 - QEN71_RS03410 0.58 -0.8 760,253 - QEN71_RS03410 0.58 +0.1 760,253 - QEN71_RS03410 0.58 +0.1 760,253 - QEN71_RS03410 0.58 -2.1 760,253 - QEN71_RS03410 0.58 +0.1 760,253 - QEN71_RS03410 0.58 +2.3 760,768 + -0.4 760,768 + -1.7 760,768 + +0.7 760,768 + +1.2 760,768 + -0.2 760,768 + +1.3 760,769 - -1.3 760,769 - -0.9 760,769 - -0.6 760,769 - -0.1 760,862 + +0.8 760,863 + -0.2 760,863 + +1.0 760,863 + +0.8 760,863 + -0.2 760,863 + -1.5 760,863 + -0.3 760,863 + -0.2 760,863 + -1.5 760,863 + -1.2 760,863 + +0.0 760,863 + -0.3 760,863 + +0.0 760,863 + -2.1 760,863 + +0.2 760,863 + -0.4 760,863 + +0.4 760,863 + -0.7 760,863 + +0.5 760,863 + -0.2 760,863 + +0.5 760,863 + -0.4 760,863 + -0.9 760,863 + -0.9 760,863 + -0.9 760,864 - -0.3 760,864 - -0.4 760,864 - -0.8 760,864 - -0.1 760,864 - +0.1 760,864 - +1.1 760,864 - -0.4 760,864 - -0.1 760,864 - -0.1 760,864 - -0.4 760,864 - -0.1 760,875 - +0.2 760,893 + -1.4 760,894 - +0.6 760,894 - +2.8 760,894 - +0.6 760,894 - -0.2 760,927 + +0.4 760,927 + +0.7 760,928 - -0.9 760,928 - -0.4 760,968 + -0.0 760,968 + -0.1 760,968 + +0.9 760,968 + -1.1 760,968 + +0.0 760,968 + +1.0 760,968 + -0.5 760,969 - +0.2 760,969 - +1.3 760,969 - -0.8 761,083 + +0.2 761,103 + -1.8 761,580 + QEN71_RS03415 0.35 +0.4 761,580 + QEN71_RS03415 0.35 -1.5 761,580 + QEN71_RS03415 0.35 +0.7 761,580 + QEN71_RS03415 0.35 +1.4 761,580 + QEN71_RS03415 0.35 -2.1 761,580 + QEN71_RS03415 0.35 -0.6 761,581 - QEN71_RS03415 0.35 +0.0 761,581 - QEN71_RS03415 0.35 +1.0 761,581 - QEN71_RS03415 0.35 -1.0 761,581 - QEN71_RS03415 0.35 -0.5 761,726 + QEN71_RS03415 0.46 -0.4 761,727 - QEN71_RS03415 0.46 -0.1 761,727 - QEN71_RS03415 0.46 +0.5 761,727 - QEN71_RS03415 0.46 +0.9 761,727 - QEN71_RS03415 0.46 -2.1 761,727 - QEN71_RS03415 0.46 +0.3 761,727 - QEN71_RS03415 0.46 -1.1 761,727 - QEN71_RS03415 0.46 -1.2 761,844 + QEN71_RS03415 0.55 -2.3 761,844 + QEN71_RS03415 0.55 +0.1 761,844 + QEN71_RS03415 0.55 +1.8 761,844 + QEN71_RS03415 0.55 +0.0 761,844 + QEN71_RS03415 0.55 +0.8 761,844 + QEN71_RS03415 0.55 -0.4 761,844 + QEN71_RS03415 0.55 +0.7 761,844 + QEN71_RS03415 0.55 +0.5 761,845 - QEN71_RS03415 0.55 -0.2 761,845 - QEN71_RS03415 0.55 -0.0 761,845 - QEN71_RS03415 0.55 -0.1 761,845 - QEN71_RS03415 0.55 -0.7 761,845 - QEN71_RS03415 0.55 -0.0 761,845 - QEN71_RS03415 0.55 -0.2 761,904 + QEN71_RS03415 0.60 +0.9 761,904 + QEN71_RS03415 0.60 +0.0 761,905 - QEN71_RS03415 0.60 +0.1 761,946 + QEN71_RS03415 0.63 -0.2 761,946 + QEN71_RS03415 0.63 -0.6 761,946 + QEN71_RS03415 0.63 +0.9 761,947 - QEN71_RS03415 0.63 -0.3 761,947 - QEN71_RS03415 0.63 -0.6 762,039 + QEN71_RS03415 0.70 -0.5 762,039 + QEN71_RS03415 0.70 -2.0 762,039 + QEN71_RS03415 0.70 -0.8 762,039 + QEN71_RS03415 0.70 -1.2 762,040 - QEN71_RS03415 0.70 +0.7 762,040 - QEN71_RS03415 0.70 +1.2 762,093 + QEN71_RS03415 0.74 -0.4 762,093 + QEN71_RS03415 0.74 +0.7 762,093 + QEN71_RS03415 0.74 -0.1 762,093 + QEN71_RS03415 0.74 -0.4 762,093 + QEN71_RS03415 0.74 +0.6 762,094 - QEN71_RS03415 0.74 +0.9 762,094 - QEN71_RS03415 0.74 -0.3 762,094 - QEN71_RS03415 0.74 -0.1 762,094 - QEN71_RS03415 0.74 +0.1 762,094 - QEN71_RS03415 0.74 -0.2 762,094 - QEN71_RS03415 0.74 -0.3 762,126 + QEN71_RS03415 0.77 -0.5 762,126 + QEN71_RS03415 0.77 +0.8 762,135 + QEN71_RS03415 0.78 +0.6 762,136 - QEN71_RS03415 0.78 -1.2 762,136 - QEN71_RS03415 0.78 +1.7 762,243 + QEN71_RS03415 0.86 +0.1 762,244 - QEN71_RS03415 0.86 -1.5 762,273 + QEN71_RS03415 0.88 +1.1 762,291 + QEN71_RS03415 0.89 -0.8 762,291 + QEN71_RS03415 0.89 -0.9 762,291 + QEN71_RS03415 0.89 +1.4 762,291 + QEN71_RS03415 0.89 -0.0 762,291 + QEN71_RS03415 0.89 +0.3 762,291 + QEN71_RS03415 0.89 -0.4 762,291 + QEN71_RS03415 0.89 -0.4 762,291 + QEN71_RS03415 0.89 +0.4 762,292 - QEN71_RS03415 0.90 -0.1 762,292 - QEN71_RS03415 0.90 +2.2 762,292 - QEN71_RS03415 0.90 +1.7 762,292 - QEN71_RS03415 0.90 -0.7 762,292 - QEN71_RS03415 0.90 +0.3 762,292 - QEN71_RS03415 0.90 -0.1 762,292 - QEN71_RS03415 0.90 -1.5 762,292 - QEN71_RS03415 0.90 +0.8 762,324 + -1.2 762,325 - -0.8
Or see this region's nucleotide sequence