Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03315 and QEN71_RS03320 are separated by 213 nucleotides QEN71_RS03320 and QEN71_RS03325 overlap by 23 nucleotides QEN71_RS03325 and QEN71_RS03330 are separated by 147 nucleotides
QEN71_RS03315: QEN71_RS03315 - Bcr/CflA family multidrug efflux MFS transporter, at 734,976 to 736,187
_RS03315
QEN71_RS03320: QEN71_RS03320 - bifunctional transcriptional regulator/glucokinase, at 736,401 to 738,317
_RS03320
QEN71_RS03325: QEN71_RS03325 - 6-phosphogluconolactonase, at 738,295 to 739,002
_RS03325
QEN71_RS03330: QEN71_RS03330 - glucose-6-phosphate dehydrogenase, at 739,150 to 740,607
_RS03330
Position (kb) 736
737
738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.454 kb on + strand, within QEN71_RS03315 at 735.455 kb on - strand, within QEN71_RS03315 at 735.455 kb on - strand, within QEN71_RS03315 at 735.455 kb on - strand, within QEN71_RS03315 at 735.455 kb on - strand, within QEN71_RS03315 at 735.597 kb on + strand, within QEN71_RS03315 at 735.597 kb on + strand, within QEN71_RS03315 at 735.597 kb on + strand, within QEN71_RS03315 at 735.598 kb on - strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.675 kb on + strand, within QEN71_RS03315 at 735.676 kb on - strand, within QEN71_RS03315 at 735.676 kb on - strand, within QEN71_RS03315 at 735.676 kb on - strand, within QEN71_RS03315 at 735.676 kb on - strand, within QEN71_RS03315 at 735.676 kb on - strand, within QEN71_RS03315 at 735.699 kb on + strand, within QEN71_RS03315 at 735.699 kb on + strand, within QEN71_RS03315 at 735.700 kb on - strand, within QEN71_RS03315 at 735.700 kb on - strand, within QEN71_RS03315 at 735.701 kb on + strand, within QEN71_RS03315 at 735.701 kb on + strand, within QEN71_RS03315 at 735.702 kb on - strand, within QEN71_RS03315 at 735.702 kb on - strand, within QEN71_RS03315 at 735.708 kb on + strand, within QEN71_RS03315 at 735.709 kb on - strand, within QEN71_RS03315 at 735.709 kb on - strand, within QEN71_RS03315 at 735.732 kb on + strand, within QEN71_RS03315 at 735.732 kb on + strand, within QEN71_RS03315 at 735.732 kb on + strand, within QEN71_RS03315 at 735.733 kb on - strand, within QEN71_RS03315 at 735.842 kb on + strand, within QEN71_RS03315 at 735.843 kb on - strand, within QEN71_RS03315 at 735.940 kb on + strand, within QEN71_RS03315 at 735.941 kb on - strand, within QEN71_RS03315 at 735.959 kb on + strand, within QEN71_RS03315 at 735.960 kb on - strand, within QEN71_RS03315 at 735.960 kb on - strand, within QEN71_RS03315 at 736.042 kb on + strand, within QEN71_RS03315 at 736.042 kb on + strand, within QEN71_RS03315 at 736.042 kb on + strand, within QEN71_RS03315 at 736.042 kb on + strand, within QEN71_RS03315 at 736.043 kb on - strand, within QEN71_RS03315 at 736.043 kb on - strand, within QEN71_RS03315 at 736.109 kb on + strand at 736.109 kb on + strand at 736.110 kb on - strand at 736.110 kb on - strand at 736.110 kb on - strand at 736.110 kb on - strand at 736.110 kb on - strand at 736.248 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.304 kb on - strand at 736.402 kb on + strand at 736.433 kb on + strand at 736.433 kb on + strand at 736.434 kb on - strand at 736.457 kb on + strand at 736.457 kb on + strand at 736.457 kb on + strand at 736.458 kb on - strand at 736.458 kb on - strand at 736.458 kb on - strand at 736.458 kb on - strand at 736.458 kb on - strand at 736.484 kb on + strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.494 kb on - strand at 736.494 kb on - strand at 736.494 kb on - strand at 736.494 kb on - strand at 736.550 kb on + strand at 736.586 kb on + strand at 736.587 kb on - strand at 736.587 kb on - strand at 736.661 kb on + strand, within QEN71_RS03320 at 736.662 kb on - strand, within QEN71_RS03320 at 736.670 kb on + strand, within QEN71_RS03320 at 736.670 kb on + strand, within QEN71_RS03320 at 736.671 kb on - strand, within QEN71_RS03320 at 736.671 kb on - strand, within QEN71_RS03320 at 736.804 kb on + strand, within QEN71_RS03320 at 736.804 kb on + strand, within QEN71_RS03320 at 736.804 kb on + strand, within QEN71_RS03320 at 736.804 kb on + strand, within QEN71_RS03320 at 736.804 kb on + strand, within QEN71_RS03320 at 736.805 kb on - strand, within QEN71_RS03320 at 736.805 kb on - strand, within QEN71_RS03320 at 736.805 kb on - strand, within QEN71_RS03320 at 736.805 kb on - strand, within QEN71_RS03320 at 736.852 kb on + strand, within QEN71_RS03320 at 736.852 kb on + strand, within QEN71_RS03320 at 736.852 kb on + strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.853 kb on - strand, within QEN71_RS03320 at 736.875 kb on - strand, within QEN71_RS03320 at 736.875 kb on - strand, within QEN71_RS03320 at 737.276 kb on + strand, within QEN71_RS03320 at 737.277 kb on - strand, within QEN71_RS03320 at 737.277 kb on - strand, within QEN71_RS03320 at 737.380 kb on + strand, within QEN71_RS03320 at 737.380 kb on + strand, within QEN71_RS03320 at 737.380 kb on + strand, within QEN71_RS03320 at 737.380 kb on + strand, within QEN71_RS03320 at 737.381 kb on - strand, within QEN71_RS03320 at 737.381 kb on - strand, within QEN71_RS03320 at 737.381 kb on - strand, within QEN71_RS03320 at 737.381 kb on - strand, within QEN71_RS03320 at 737.381 kb on - strand, within QEN71_RS03320 at 737.401 kb on + strand, within QEN71_RS03320 at 737.402 kb on - strand, within QEN71_RS03320 at 737.402 kb on - strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.494 kb on + strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.495 kb on - strand, within QEN71_RS03320 at 737.675 kb on - strand, within QEN71_RS03320 at 737.675 kb on - strand, within QEN71_RS03320 at 737.744 kb on - strand, within QEN71_RS03320 at 738.131 kb on - strand at 738.131 kb on - strand at 738.131 kb on - strand at 738.160 kb on + strand at 738.161 kb on - strand at 738.175 kb on + strand at 738.176 kb on - strand at 738.176 kb on - strand at 738.176 kb on - strand at 738.296 kb on + strand at 738.296 kb on + strand at 738.296 kb on + strand at 738.296 kb on + strand at 738.296 kb on + strand at 738.296 kb on + strand at 738.297 kb on - strand at 738.297 kb on - strand at 738.297 kb on - strand at 738.311 kb on + strand at 738.311 kb on + strand at 738.312 kb on - strand at 738.312 kb on - strand at 738.312 kb on - strand at 738.312 kb on - strand at 738.653 kb on + strand, within QEN71_RS03325 at 738.654 kb on - strand, within QEN71_RS03325 at 738.654 kb on - strand, within QEN71_RS03325 at 738.654 kb on - strand, within QEN71_RS03325 at 738.654 kb on - strand, within QEN71_RS03325 at 738.676 kb on - strand, within QEN71_RS03325 at 738.829 kb on + strand, within QEN71_RS03325 at 738.928 kb on + strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 738.929 kb on - strand, within QEN71_RS03325 at 739.137 kb on + strand at 739.137 kb on + strand at 739.140 kb on + strand at 739.140 kb on + strand at 739.140 kb on + strand at 739.141 kb on - strand at 739.141 kb on - strand at 739.141 kb on - strand at 739.176 kb on + strand at 739.176 kb on + strand at 739.177 kb on - strand at 739.177 kb on - strand at 739.221 kb on + strand at 739.221 kb on + strand at 739.222 kb on - strand at 739.222 kb on - strand at 739.222 kb on - strand at 739.222 kb on - strand at 739.222 kb on - strand at 739.232 kb on + strand at 739.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 735,454 + QEN71_RS03315 0.39 +0.9 735,455 - QEN71_RS03315 0.40 -0.9 735,455 - QEN71_RS03315 0.40 -0.1 735,455 - QEN71_RS03315 0.40 +0.4 735,455 - QEN71_RS03315 0.40 +1.6 735,597 + QEN71_RS03315 0.51 -0.2 735,597 + QEN71_RS03315 0.51 -0.3 735,597 + QEN71_RS03315 0.51 +0.1 735,598 - QEN71_RS03315 0.51 -0.9 735,675 + QEN71_RS03315 0.58 +0.1 735,675 + QEN71_RS03315 0.58 -0.8 735,675 + QEN71_RS03315 0.58 +0.0 735,675 + QEN71_RS03315 0.58 +1.1 735,675 + QEN71_RS03315 0.58 -0.1 735,675 + QEN71_RS03315 0.58 -2.0 735,675 + QEN71_RS03315 0.58 -0.5 735,676 - QEN71_RS03315 0.58 -0.3 735,676 - QEN71_RS03315 0.58 +0.8 735,676 - QEN71_RS03315 0.58 +1.0 735,676 - QEN71_RS03315 0.58 +1.2 735,676 - QEN71_RS03315 0.58 -0.1 735,699 + QEN71_RS03315 0.60 +0.7 735,699 + QEN71_RS03315 0.60 -0.1 735,700 - QEN71_RS03315 0.60 +1.0 735,700 - QEN71_RS03315 0.60 -0.5 735,701 + QEN71_RS03315 0.60 -0.1 735,701 + QEN71_RS03315 0.60 +0.3 735,702 - QEN71_RS03315 0.60 +0.5 735,702 - QEN71_RS03315 0.60 +0.4 735,708 + QEN71_RS03315 0.60 +0.4 735,709 - QEN71_RS03315 0.60 +0.5 735,709 - QEN71_RS03315 0.60 -1.4 735,732 + QEN71_RS03315 0.62 +0.5 735,732 + QEN71_RS03315 0.62 +0.3 735,732 + QEN71_RS03315 0.62 +0.4 735,733 - QEN71_RS03315 0.62 -2.2 735,842 + QEN71_RS03315 0.71 +0.7 735,843 - QEN71_RS03315 0.72 -0.8 735,940 + QEN71_RS03315 0.80 +0.5 735,941 - QEN71_RS03315 0.80 -0.5 735,959 + QEN71_RS03315 0.81 +1.2 735,960 - QEN71_RS03315 0.81 -0.3 735,960 - QEN71_RS03315 0.81 +1.9 736,042 + QEN71_RS03315 0.88 -3.7 736,042 + QEN71_RS03315 0.88 +0.4 736,042 + QEN71_RS03315 0.88 -0.4 736,042 + QEN71_RS03315 0.88 -0.1 736,043 - QEN71_RS03315 0.88 +0.9 736,043 - QEN71_RS03315 0.88 +0.3 736,109 + -0.7 736,109 + +0.0 736,110 - +0.5 736,110 - -0.4 736,110 - +1.9 736,110 - +0.9 736,110 - +0.9 736,248 - +1.2 736,304 - -2.1 736,304 - +0.7 736,304 - +0.2 736,304 - -0.9 736,304 - -2.5 736,304 - -1.4 736,304 - -0.2 736,402 + -0.9 736,433 + +0.8 736,433 + -3.6 736,434 - -1.0 736,457 + -1.5 736,457 + -0.7 736,457 + +0.6 736,458 - -2.0 736,458 - -0.4 736,458 - -1.0 736,458 - +0.3 736,458 - -1.9 736,484 + -1.7 736,485 - -1.2 736,485 - -0.2 736,494 - -2.2 736,494 - -1.7 736,494 - -1.1 736,494 - -1.4 736,550 + +0.1 736,586 + -1.1 736,587 - -1.5 736,587 - -0.0 736,661 + QEN71_RS03320 0.14 -2.2 736,662 - QEN71_RS03320 0.14 -2.0 736,670 + QEN71_RS03320 0.14 -0.4 736,670 + QEN71_RS03320 0.14 -1.2 736,671 - QEN71_RS03320 0.14 -1.5 736,671 - QEN71_RS03320 0.14 -0.7 736,804 + QEN71_RS03320 0.21 -0.4 736,804 + QEN71_RS03320 0.21 -0.1 736,804 + QEN71_RS03320 0.21 -0.1 736,804 + QEN71_RS03320 0.21 +1.7 736,804 + QEN71_RS03320 0.21 -1.8 736,805 - QEN71_RS03320 0.21 -3.3 736,805 - QEN71_RS03320 0.21 -1.1 736,805 - QEN71_RS03320 0.21 -2.7 736,805 - QEN71_RS03320 0.21 -1.1 736,852 + QEN71_RS03320 0.24 -2.4 736,852 + QEN71_RS03320 0.24 -1.2 736,852 + QEN71_RS03320 0.24 +0.1 736,853 - QEN71_RS03320 0.24 -0.1 736,853 - QEN71_RS03320 0.24 -1.0 736,853 - QEN71_RS03320 0.24 -0.1 736,853 - QEN71_RS03320 0.24 -0.3 736,853 - QEN71_RS03320 0.24 -2.7 736,853 - QEN71_RS03320 0.24 -0.4 736,853 - QEN71_RS03320 0.24 +0.3 736,853 - QEN71_RS03320 0.24 -0.1 736,853 - QEN71_RS03320 0.24 -2.6 736,875 - QEN71_RS03320 0.25 -1.1 736,875 - QEN71_RS03320 0.25 -0.9 737,276 + QEN71_RS03320 0.46 +0.6 737,277 - QEN71_RS03320 0.46 -0.4 737,277 - QEN71_RS03320 0.46 -0.5 737,380 + QEN71_RS03320 0.51 -1.9 737,380 + QEN71_RS03320 0.51 -1.8 737,380 + QEN71_RS03320 0.51 -0.7 737,380 + QEN71_RS03320 0.51 -0.7 737,381 - QEN71_RS03320 0.51 -0.4 737,381 - QEN71_RS03320 0.51 -0.4 737,381 - QEN71_RS03320 0.51 -1.1 737,381 - QEN71_RS03320 0.51 -1.5 737,381 - QEN71_RS03320 0.51 -2.3 737,401 + QEN71_RS03320 0.52 +0.1 737,402 - QEN71_RS03320 0.52 -1.7 737,402 - QEN71_RS03320 0.52 -0.1 737,494 + QEN71_RS03320 0.57 -2.1 737,494 + QEN71_RS03320 0.57 -2.1 737,494 + QEN71_RS03320 0.57 -3.2 737,494 + QEN71_RS03320 0.57 -0.4 737,494 + QEN71_RS03320 0.57 -2.5 737,494 + QEN71_RS03320 0.57 -0.1 737,494 + QEN71_RS03320 0.57 -0.8 737,494 + QEN71_RS03320 0.57 -1.2 737,494 + QEN71_RS03320 0.57 -1.1 737,494 + QEN71_RS03320 0.57 -1.9 737,494 + QEN71_RS03320 0.57 -0.9 737,494 + QEN71_RS03320 0.57 -0.1 737,494 + QEN71_RS03320 0.57 -1.4 737,494 + QEN71_RS03320 0.57 -1.2 737,494 + QEN71_RS03320 0.57 -0.1 737,494 + QEN71_RS03320 0.57 -0.4 737,494 + QEN71_RS03320 0.57 -2.1 737,494 + QEN71_RS03320 0.57 -0.4 737,495 - QEN71_RS03320 0.57 -2.0 737,495 - QEN71_RS03320 0.57 -0.7 737,495 - QEN71_RS03320 0.57 -2.7 737,495 - QEN71_RS03320 0.57 -2.6 737,495 - QEN71_RS03320 0.57 -2.0 737,495 - QEN71_RS03320 0.57 -2.8 737,495 - QEN71_RS03320 0.57 -3.3 737,495 - QEN71_RS03320 0.57 -2.9 737,495 - QEN71_RS03320 0.57 -1.1 737,495 - QEN71_RS03320 0.57 -1.2 737,495 - QEN71_RS03320 0.57 -0.1 737,495 - QEN71_RS03320 0.57 -2.7 737,675 - QEN71_RS03320 0.66 -0.7 737,675 - QEN71_RS03320 0.66 -2.1 737,744 - QEN71_RS03320 0.70 +0.1 738,131 - -2.2 738,131 - -1.1 738,131 - -2.0 738,160 + -0.5 738,161 - -1.2 738,175 + -0.7 738,176 - -0.4 738,176 - -1.5 738,176 - +0.5 738,296 + +0.3 738,296 + -0.4 738,296 + -2.1 738,296 + -1.4 738,296 + -1.2 738,296 + -2.3 738,297 - -0.9 738,297 - +0.7 738,297 - -2.2 738,311 + -1.1 738,311 + -3.1 738,312 - -2.5 738,312 - -3.4 738,312 - +1.2 738,312 - -1.1 738,653 + QEN71_RS03325 0.51 -0.5 738,654 - QEN71_RS03325 0.51 -1.2 738,654 - QEN71_RS03325 0.51 -0.1 738,654 - QEN71_RS03325 0.51 -0.9 738,654 - QEN71_RS03325 0.51 +0.2 738,676 - QEN71_RS03325 0.54 -0.1 738,829 + QEN71_RS03325 0.75 -0.1 738,928 + QEN71_RS03325 0.89 -1.1 738,929 - QEN71_RS03325 0.90 -0.3 738,929 - QEN71_RS03325 0.90 -1.1 738,929 - QEN71_RS03325 0.90 -1.9 738,929 - QEN71_RS03325 0.90 -1.1 738,929 - QEN71_RS03325 0.90 +0.3 738,929 - QEN71_RS03325 0.90 +1.5 738,929 - QEN71_RS03325 0.90 +0.9 739,137 + -0.7 739,137 + -3.2 739,140 + -0.4 739,140 + +1.2 739,140 + -3.3 739,141 - -0.4 739,141 - +0.3 739,141 - -0.4 739,176 + -1.1 739,176 + -0.7 739,177 - +0.3 739,177 - -1.4 739,221 + -0.4 739,221 + -0.9 739,222 - +0.4 739,222 - +0.6 739,222 - -0.1 739,222 - +1.2 739,222 - +0.1 739,232 + -0.7 739,233 - +0.9
Or see this region's nucleotide sequence