Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02435 and QEN71_RS02440 are separated by 177 nucleotides QEN71_RS02440 and QEN71_RS02445 are separated by 24 nucleotides QEN71_RS02445 and QEN71_RS02450 are separated by 73 nucleotides
QEN71_RS02435: QEN71_RS02435 - fructose-bisphosphate aldolase class II, at 544,493 to 545,557
_RS02435
QEN71_RS02440: QEN71_RS02440 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 545,735 to 546,625
_RS02440
QEN71_RS02445: QEN71_RS02445 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 546,650 to 547,159
_RS02445
QEN71_RS02450: QEN71_RS02450 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 547,233 to 548,441
_RS02450
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 545.603 kb on + strand at 545.603 kb on + strand at 545.603 kb on + strand at 545.603 kb on + strand at 545.740 kb on + strand at 545.747 kb on + strand at 545.804 kb on + strand at 545.804 kb on + strand at 545.905 kb on + strand, within QEN71_RS02440 at 546.104 kb on + strand, within QEN71_RS02440 at 546.104 kb on + strand, within QEN71_RS02440 at 546.233 kb on + strand, within QEN71_RS02440 at 546.233 kb on + strand, within QEN71_RS02440 at 546.302 kb on + strand, within QEN71_RS02440 at 546.302 kb on + strand, within QEN71_RS02440 at 546.302 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.392 kb on + strand, within QEN71_RS02440 at 546.449 kb on + strand, within QEN71_RS02440 at 546.581 kb on + strand at 546.581 kb on + strand at 546.815 kb on + strand, within QEN71_RS02445 at 546.944 kb on + strand, within QEN71_RS02445 at 547.157 kb on + strand at 547.157 kb on + strand at 547.157 kb on + strand at 547.157 kb on + strand at 547.157 kb on + strand at 547.164 kb on + strand at 547.164 kb on + strand at 547.164 kb on + strand at 547.419 kb on + strand, within QEN71_RS02450 at 547.571 kb on + strand, within QEN71_RS02450 at 547.571 kb on + strand, within QEN71_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 545,603 + +0.2 545,603 + -0.0 545,603 + -0.6 545,603 + -1.5 545,740 + -1.0 545,747 + -0.6 545,804 + -2.4 545,804 + -0.9 545,905 + QEN71_RS02440 0.19 -0.9 546,104 + QEN71_RS02440 0.41 -0.0 546,104 + QEN71_RS02440 0.41 -2.4 546,233 + QEN71_RS02440 0.56 -1.6 546,233 + QEN71_RS02440 0.56 -2.1 546,302 + QEN71_RS02440 0.64 -2.0 546,302 + QEN71_RS02440 0.64 -0.4 546,302 + QEN71_RS02440 0.64 -1.7 546,392 + QEN71_RS02440 0.74 -2.1 546,392 + QEN71_RS02440 0.74 -0.1 546,392 + QEN71_RS02440 0.74 -1.5 546,392 + QEN71_RS02440 0.74 -0.9 546,392 + QEN71_RS02440 0.74 -0.4 546,392 + QEN71_RS02440 0.74 -2.8 546,392 + QEN71_RS02440 0.74 -2.7 546,392 + QEN71_RS02440 0.74 -1.2 546,449 + QEN71_RS02440 0.80 -0.9 546,581 + -0.6 546,581 + -2.0 546,815 + QEN71_RS02445 0.32 -1.4 546,944 + QEN71_RS02445 0.58 -2.1 547,157 + +1.4 547,157 + +0.4 547,157 + +1.5 547,157 + +0.4 547,157 + -0.2 547,164 + -1.2 547,164 + +0.2 547,164 + +0.8 547,419 + QEN71_RS02450 0.15 -1.2 547,571 + QEN71_RS02450 0.28 -1.4 547,571 + QEN71_RS02450 0.28 -2.2
Or see this region's nucleotide sequence