Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00225 and QEN71_RS00230 are separated by 10 nucleotides QEN71_RS00230 and QEN71_RS00235 are separated by 128 nucleotides QEN71_RS00235 and QEN71_RS00240 overlap by 4 nucleotides
QEN71_RS00225: QEN71_RS00225 - rod shape-determining protein RodA, at 46,059 to 47,207
_RS00225
QEN71_RS00230: QEN71_RS00230 - penicillin-binding protein 2, at 47,218 to 49,611
_RS00230
QEN71_RS00235: QEN71_RS00235 - rod shape-determining protein MreD, at 49,740 to 50,252
_RS00235
QEN71_RS00240: QEN71_RS00240 - rod shape-determining protein MreC, at 50,249 to 51,349
_RS00240
Position (kb) 47
48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 47.220 kb on - strand at 47.220 kb on - strand at 47.220 kb on - strand at 49.677 kb on - strand at 49.847 kb on - strand, within QEN71_RS00235 at 50.527 kb on - strand, within QEN71_RS00240 at 50.527 kb on - strand, within QEN71_RS00240 at 50.527 kb on - strand, within QEN71_RS00240 at 50.532 kb on - strand, within QEN71_RS00240 at 50.532 kb on - strand, within QEN71_RS00240 at 50.532 kb on - strand, within QEN71_RS00240 at 50.532 kb on - strand, within QEN71_RS00240 at 50.532 kb on - strand, within QEN71_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 47,220 - -2.2 47,220 - -0.5 47,220 - -2.3 49,677 - +0.4 49,847 - QEN71_RS00235 0.21 -1.2 50,527 - QEN71_RS00240 0.25 -1.1 50,527 - QEN71_RS00240 0.25 +1.2 50,527 - QEN71_RS00240 0.25 -1.1 50,532 - QEN71_RS00240 0.26 -0.3 50,532 - QEN71_RS00240 0.26 -0.9 50,532 - QEN71_RS00240 0.26 -0.3 50,532 - QEN71_RS00240 0.26 -0.0 50,532 - QEN71_RS00240 0.26 -2.8
Or see this region's nucleotide sequence