Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03990

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03989 and MIT1002_03990 are separated by 280 nucleotidesMIT1002_03990 and MIT1002_03991 are separated by 26 nucleotidesMIT1002_03991 and MIT1002_03992 are separated by 71 nucleotides MIT1002_03989: MIT1002_03989 - Succinate semialdehyde dehydrogenase [NAD(P)+] Sad, at 4,476,116 to 4,477,504 _03989 MIT1002_03990: MIT1002_03990 - Non-canonical purine NTP phosphatase, at 4,477,785 to 4,478,330 _03990 MIT1002_03991: MIT1002_03991 - GMP/IMP nucleotidase YrfG, at 4,478,357 to 4,479,070 _03991 MIT1002_03992: MIT1002_03992 - ADP compounds hydrolase NudE, at 4,479,142 to 4,479,705 _03992 Position (kb) 4477 4478 4479Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4476.790 kb on - strand, within MIT1002_03989at 4476.810 kb on - strand, within MIT1002_03989at 4476.825 kb on - strand, within MIT1002_03989at 4476.861 kb on + strand, within MIT1002_03989at 4476.861 kb on + strand, within MIT1002_03989at 4476.889 kb on + strand, within MIT1002_03989at 4477.004 kb on + strand, within MIT1002_03989at 4477.052 kb on - strand, within MIT1002_03989at 4477.089 kb on + strand, within MIT1002_03989at 4477.147 kb on - strand, within MIT1002_03989at 4477.213 kb on - strand, within MIT1002_03989at 4477.249 kb on - strand, within MIT1002_03989at 4477.281 kb on - strand, within MIT1002_03989at 4477.298 kb on - strand, within MIT1002_03989at 4477.369 kb on - strandat 4477.510 kb on - strandat 4477.610 kb on - strandat 4477.616 kb on + strandat 4477.719 kb on + strandat 4477.748 kb on + strandat 4477.748 kb on + strandat 4477.768 kb on + strandat 4477.768 kb on + strandat 4477.776 kb on - strandat 4477.777 kb on + strandat 4477.785 kb on - strandat 4477.785 kb on - strandat 4477.785 kb on - strandat 4477.838 kb on - strandat 4477.866 kb on + strand, within MIT1002_03990at 4477.954 kb on + strand, within MIT1002_03990at 4477.957 kb on - strand, within MIT1002_03990at 4477.973 kb on + strand, within MIT1002_03990at 4478.005 kb on - strand, within MIT1002_03990at 4478.026 kb on + strand, within MIT1002_03990at 4478.049 kb on + strand, within MIT1002_03990at 4478.076 kb on - strand, within MIT1002_03990at 4478.086 kb on - strand, within MIT1002_03990at 4478.088 kb on + strand, within MIT1002_03990at 4478.114 kb on + strand, within MIT1002_03990at 4478.114 kb on - strand, within MIT1002_03990at 4478.125 kb on + strand, within MIT1002_03990at 4478.140 kb on + strand, within MIT1002_03990at 4478.198 kb on + strand, within MIT1002_03990at 4478.211 kb on + strand, within MIT1002_03990at 4478.216 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.257 kb on - strand, within MIT1002_03990at 4478.271 kb on - strand, within MIT1002_03990at 4478.286 kb on - strandat 4478.379 kb on + strandat 4478.386 kb on - strandat 4478.433 kb on + strand, within MIT1002_03991at 4478.433 kb on + strand, within MIT1002_03991at 4478.469 kb on + strand, within MIT1002_03991at 4478.513 kb on - strand, within MIT1002_03991at 4478.592 kb on - strand, within MIT1002_03991at 4478.651 kb on + strand, within MIT1002_03991at 4478.651 kb on + strand, within MIT1002_03991at 4478.679 kb on - strand, within MIT1002_03991at 4478.697 kb on + strand, within MIT1002_03991at 4478.979 kb on + strand, within MIT1002_03991at 4478.987 kb on - strand, within MIT1002_03991at 4479.015 kb on + strandat 4479.034 kb on - strandat 4479.088 kb on + strandat 4479.211 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.221 kb on - strand, within MIT1002_03992at 4479.221 kb on - strand, within MIT1002_03992at 4479.227 kb on + strand, within MIT1002_03992at 4479.234 kb on - strand, within MIT1002_03992at 4479.235 kb on - strand, within MIT1002_03992at 4479.272 kb on - strand, within MIT1002_03992

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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4,476,790 - MIT1002_03989 0.49 +1.4
4,476,810 - MIT1002_03989 0.50 -1.7
4,476,825 - MIT1002_03989 0.51 -1.4
4,476,861 + MIT1002_03989 0.54 +1.9
4,476,861 + MIT1002_03989 0.54 +0.7
4,476,889 + MIT1002_03989 0.56 +1.9
4,477,004 + MIT1002_03989 0.64 -1.3
4,477,052 - MIT1002_03989 0.67 +0.4
4,477,089 + MIT1002_03989 0.70 +0.1
4,477,147 - MIT1002_03989 0.74 -0.6
4,477,213 - MIT1002_03989 0.79 -1.3
4,477,249 - MIT1002_03989 0.82 -0.4
4,477,281 - MIT1002_03989 0.84 +0.5
4,477,298 - MIT1002_03989 0.85 +0.8
4,477,369 - +0.2
4,477,510 - +0.2
4,477,610 - -0.2
4,477,616 + -0.5
4,477,719 + -0.7
4,477,748 + -1.1
4,477,748 + -1.1
4,477,768 + -0.4
4,477,768 + -0.6
4,477,776 - +0.4
4,477,777 + -0.6
4,477,785 - +1.2
4,477,785 - +0.5
4,477,785 - -1.0
4,477,838 - -2.2
4,477,866 + MIT1002_03990 0.15 +0.8
4,477,954 + MIT1002_03990 0.31 -0.1
4,477,957 - MIT1002_03990 0.32 +1.2
4,477,973 + MIT1002_03990 0.34 +0.6
4,478,005 - MIT1002_03990 0.40 -2.0
4,478,026 + MIT1002_03990 0.44 -3.0
4,478,049 + MIT1002_03990 0.48 +1.4
4,478,076 - MIT1002_03990 0.53 +0.7
4,478,086 - MIT1002_03990 0.55 -2.1
4,478,088 + MIT1002_03990 0.55 -0.6
4,478,114 + MIT1002_03990 0.60 +0.0
4,478,114 - MIT1002_03990 0.60 +0.0
4,478,125 + MIT1002_03990 0.62 +0.3
4,478,140 + MIT1002_03990 0.65 +1.6
4,478,198 + MIT1002_03990 0.76 -1.3
4,478,211 + MIT1002_03990 0.78 -0.2
4,478,216 + MIT1002_03990 0.79 -0.1
4,478,221 + MIT1002_03990 0.80 -0.5
4,478,221 + MIT1002_03990 0.80 -1.5
4,478,221 + MIT1002_03990 0.80 +0.0
4,478,221 + MIT1002_03990 0.80 -0.1
4,478,221 + MIT1002_03990 0.80 +0.5
4,478,221 + MIT1002_03990 0.80 +0.4
4,478,221 + MIT1002_03990 0.80 -1.7
4,478,221 + MIT1002_03990 0.80 -0.6
4,478,221 + MIT1002_03990 0.80 +1.5
4,478,221 + MIT1002_03990 0.80 +0.1
4,478,221 + MIT1002_03990 0.80 -0.0
4,478,221 + MIT1002_03990 0.80 -2.0
4,478,221 + MIT1002_03990 0.80 +2.9
4,478,221 + MIT1002_03990 0.80 -0.8
4,478,221 + MIT1002_03990 0.80 +0.3
4,478,229 - MIT1002_03990 0.81 -0.5
4,478,229 - MIT1002_03990 0.81 +0.9
4,478,229 - MIT1002_03990 0.81 -1.7
4,478,229 - MIT1002_03990 0.81 -1.1
4,478,229 - MIT1002_03990 0.81 -0.5
4,478,229 - MIT1002_03990 0.81 -0.5
4,478,229 - MIT1002_03990 0.81 +1.1
4,478,229 - MIT1002_03990 0.81 +0.6
4,478,229 - MIT1002_03990 0.81 -0.4
4,478,229 - MIT1002_03990 0.81 -1.1
4,478,229 - MIT1002_03990 0.81 -1.2
4,478,229 - MIT1002_03990 0.81 +1.6
4,478,229 - MIT1002_03990 0.81 +2.0
4,478,229 - MIT1002_03990 0.81 +1.3
4,478,257 - MIT1002_03990 0.86 -1.2
4,478,271 - MIT1002_03990 0.89 +0.5
4,478,286 - -0.3
4,478,379 + +0.3
4,478,386 - +0.8
4,478,433 + MIT1002_03991 0.11 +1.5
4,478,433 + MIT1002_03991 0.11 -0.1
4,478,469 + MIT1002_03991 0.16 +0.8
4,478,513 - MIT1002_03991 0.22 +1.6
4,478,592 - MIT1002_03991 0.33 -0.5
4,478,651 + MIT1002_03991 0.41 +0.4
4,478,651 + MIT1002_03991 0.41 +0.8
4,478,679 - MIT1002_03991 0.45 +1.1
4,478,697 + MIT1002_03991 0.48 +0.3
4,478,979 + MIT1002_03991 0.87 +1.3
4,478,987 - MIT1002_03991 0.88 +0.9
4,479,015 + +0.3
4,479,034 - +1.9
4,479,088 + +0.5
4,479,211 + MIT1002_03992 0.12 -0.2
4,479,213 + MIT1002_03992 0.13 +2.9
4,479,213 + MIT1002_03992 0.13 -0.3
4,479,213 + MIT1002_03992 0.13 +0.4
4,479,221 - MIT1002_03992 0.14 -0.1
4,479,221 - MIT1002_03992 0.14 -0.2
4,479,227 + MIT1002_03992 0.15 -0.4
4,479,234 - MIT1002_03992 0.16 -0.3
4,479,235 - MIT1002_03992 0.16 +0.2
4,479,272 - MIT1002_03992 0.23 +0.1

Or see this region's nucleotide sequence