Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03762 and MIT1002_03763 are separated by 40 nucleotides MIT1002_03763 and MIT1002_03764 are separated by 40 nucleotides
MIT1002_03762: MIT1002_03762 - Transposase DDE domain protein, at 4,203,931 to 4,205,133
_03762
MIT1002_03763: MIT1002_03763 - metallophosphoesterase, DNA ligase-associated, at 4,205,174 to 4,205,878
_03763
MIT1002_03764: MIT1002_03764 - ATP-dependent helicase, at 4,205,919 to 4,208,552
_03764
Position (kb) 4205
4206 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4205.215 kb on + strand at 4205.236 kb on + strand at 4205.271 kb on + strand, within MIT1002_03763 at 4205.281 kb on + strand, within MIT1002_03763 at 4205.289 kb on - strand, within MIT1002_03763 at 4205.332 kb on - strand, within MIT1002_03763 at 4205.347 kb on + strand, within MIT1002_03763 at 4205.364 kb on + strand, within MIT1002_03763 at 4205.510 kb on - strand, within MIT1002_03763 at 4205.516 kb on - strand, within MIT1002_03763 at 4205.551 kb on - strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.568 kb on - strand, within MIT1002_03763 at 4205.608 kb on - strand, within MIT1002_03763 at 4205.630 kb on + strand, within MIT1002_03763 at 4205.638 kb on - strand, within MIT1002_03763 at 4205.659 kb on - strand, within MIT1002_03763 at 4205.732 kb on + strand, within MIT1002_03763 at 4205.740 kb on - strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4206.027 kb on + strand at 4206.085 kb on + strand at 4206.171 kb on - strand at 4206.404 kb on + strand, within MIT1002_03764 at 4206.412 kb on - strand, within MIT1002_03764 at 4206.462 kb on + strand, within MIT1002_03764 at 4206.463 kb on - strand, within MIT1002_03764 at 4206.470 kb on - strand, within MIT1002_03764 at 4206.509 kb on + strand, within MIT1002_03764 at 4206.549 kb on + strand, within MIT1002_03764 at 4206.552 kb on - strand, within MIT1002_03764 at 4206.554 kb on + strand, within MIT1002_03764 at 4206.557 kb on - strand, within MIT1002_03764 at 4206.557 kb on - strand, within MIT1002_03764 at 4206.599 kb on + strand, within MIT1002_03764 at 4206.653 kb on - strand, within MIT1002_03764 at 4206.678 kb on + strand, within MIT1002_03764 at 4206.729 kb on - strand, within MIT1002_03764 at 4206.781 kb on + strand, within MIT1002_03764 at 4206.789 kb on - strand, within MIT1002_03764 at 4206.801 kb on + strand, within MIT1002_03764 at 4206.871 kb on + strand, within MIT1002_03764
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 4,205,215 + -0.4 4,205,236 + +0.9 4,205,271 + MIT1002_03763 0.14 -0.4 4,205,281 + MIT1002_03763 0.15 -0.2 4,205,289 - MIT1002_03763 0.16 -0.6 4,205,332 - MIT1002_03763 0.22 +3.2 4,205,347 + MIT1002_03763 0.25 -0.7 4,205,364 + MIT1002_03763 0.27 -1.2 4,205,510 - MIT1002_03763 0.48 +0.3 4,205,516 - MIT1002_03763 0.49 +0.9 4,205,551 - MIT1002_03763 0.53 +0.1 4,205,560 + MIT1002_03763 0.55 -1.1 4,205,560 + MIT1002_03763 0.55 +0.5 4,205,568 - MIT1002_03763 0.56 -0.4 4,205,608 - MIT1002_03763 0.62 +1.1 4,205,630 + MIT1002_03763 0.65 -0.6 4,205,638 - MIT1002_03763 0.66 -1.0 4,205,659 - MIT1002_03763 0.69 +0.4 4,205,732 + MIT1002_03763 0.79 +1.4 4,205,740 - MIT1002_03763 0.80 +0.7 4,205,746 + MIT1002_03763 0.81 -1.5 4,205,746 + MIT1002_03763 0.81 +0.1 4,205,746 + MIT1002_03763 0.81 +0.8 4,205,746 + MIT1002_03763 0.81 +1.0 4,205,754 - MIT1002_03763 0.82 -0.2 4,205,754 - MIT1002_03763 0.82 +0.4 4,206,027 + -0.4 4,206,085 + -0.3 4,206,171 - +0.2 4,206,404 + MIT1002_03764 0.18 +1.9 4,206,412 - MIT1002_03764 0.19 +1.2 4,206,462 + MIT1002_03764 0.21 +0.6 4,206,463 - MIT1002_03764 0.21 +0.2 4,206,470 - MIT1002_03764 0.21 +2.4 4,206,509 + MIT1002_03764 0.22 -0.7 4,206,549 + MIT1002_03764 0.24 +0.9 4,206,552 - MIT1002_03764 0.24 -1.1 4,206,554 + MIT1002_03764 0.24 +0.6 4,206,557 - MIT1002_03764 0.24 -0.5 4,206,557 - MIT1002_03764 0.24 -0.1 4,206,599 + MIT1002_03764 0.26 +1.0 4,206,653 - MIT1002_03764 0.28 -1.0 4,206,678 + MIT1002_03764 0.29 +0.2 4,206,729 - MIT1002_03764 0.31 -0.1 4,206,781 + MIT1002_03764 0.33 -0.2 4,206,789 - MIT1002_03764 0.33 -1.1 4,206,801 + MIT1002_03764 0.33 -2.1 4,206,871 + MIT1002_03764 0.36 +0.9
Or see this region's nucleotide sequence