Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03664

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03661 and MIT1002_03662 are separated by 224 nucleotidesMIT1002_03662 and MIT1002_03663 overlap by 4 nucleotidesMIT1002_03663 and MIT1002_03664 are separated by 85 nucleotidesMIT1002_03664 and MIT1002_03665 are separated by 131 nucleotides MIT1002_03661: MIT1002_03661 - cold shock-like protein CspD, at 4,095,063 to 4,095,578 _03661 MIT1002_03662: MIT1002_03662 - hypothetical protein, at 4,095,803 to 4,095,949 _03662 MIT1002_03663: MIT1002_03663 - hypothetical protein, at 4,095,946 to 4,096,332 _03663 MIT1002_03664: MIT1002_03664 - Cell division protein FtsN, at 4,096,418 to 4,097,008 _03664 MIT1002_03665: MIT1002_03665 - Primosomal protein N', at 4,097,140 to 4,099,329 _03665 Position (kb) 4096 4097 4098Strain fitness (log2 ratio) -2 -1 0 1 2at 4095.504 kb on + strand, within MIT1002_03661at 4095.512 kb on - strand, within MIT1002_03661at 4095.513 kb on - strand, within MIT1002_03661at 4095.827 kb on - strand, within MIT1002_03662at 4095.827 kb on - strand, within MIT1002_03662at 4095.905 kb on - strand, within MIT1002_03662at 4095.970 kb on - strandat 4096.071 kb on + strand, within MIT1002_03663at 4096.073 kb on + strand, within MIT1002_03663at 4096.081 kb on - strand, within MIT1002_03663at 4096.091 kb on - strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.110 kb on + strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.118 kb on - strand, within MIT1002_03663at 4096.189 kb on - strand, within MIT1002_03663at 4096.233 kb on - strand, within MIT1002_03663at 4096.271 kb on + strand, within MIT1002_03663at 4096.279 kb on - strand, within MIT1002_03663at 4096.281 kb on + strand, within MIT1002_03663at 4096.281 kb on + strand, within MIT1002_03663at 4096.281 kb on + strand, within MIT1002_03663at 4096.289 kb on - strand, within MIT1002_03663at 4096.298 kb on + strandat 4096.907 kb on - strand, within MIT1002_03664at 4097.046 kb on - strandat 4097.082 kb on - strandat 4097.157 kb on + strandat 4097.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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4,095,504 + MIT1002_03661 0.85 +0.4
4,095,512 - MIT1002_03661 0.87 -0.0
4,095,513 - MIT1002_03661 0.87 +0.5
4,095,827 - MIT1002_03662 0.16 +0.5
4,095,827 - MIT1002_03662 0.16 +1.9
4,095,905 - MIT1002_03662 0.69 -2.1
4,095,970 - -0.7
4,096,071 + MIT1002_03663 0.32 +0.6
4,096,073 + MIT1002_03663 0.33 -0.8
4,096,081 - MIT1002_03663 0.35 -0.2
4,096,091 - MIT1002_03663 0.37 +0.1
4,096,110 + MIT1002_03663 0.42 +0.0
4,096,110 + MIT1002_03663 0.42 -0.4
4,096,110 + MIT1002_03663 0.42 -1.4
4,096,110 + MIT1002_03663 0.42 -0.3
4,096,110 + MIT1002_03663 0.42 -0.9
4,096,110 + MIT1002_03663 0.42 -1.1
4,096,110 + MIT1002_03663 0.42 +0.9
4,096,110 + MIT1002_03663 0.42 -0.4
4,096,110 + MIT1002_03663 0.42 -0.6
4,096,110 + MIT1002_03663 0.42 +1.2
4,096,110 + MIT1002_03663 0.42 +0.2
4,096,110 + MIT1002_03663 0.42 -0.7
4,096,118 - MIT1002_03663 0.44 +0.1
4,096,118 - MIT1002_03663 0.44 +0.8
4,096,118 - MIT1002_03663 0.44 +1.3
4,096,118 - MIT1002_03663 0.44 -0.2
4,096,118 - MIT1002_03663 0.44 +0.3
4,096,118 - MIT1002_03663 0.44 +0.4
4,096,118 - MIT1002_03663 0.44 +1.2
4,096,118 - MIT1002_03663 0.44 +1.6
4,096,118 - MIT1002_03663 0.44 +0.4
4,096,118 - MIT1002_03663 0.44 -0.7
4,096,118 - MIT1002_03663 0.44 -1.2
4,096,189 - MIT1002_03663 0.63 -0.4
4,096,233 - MIT1002_03663 0.74 +1.1
4,096,271 + MIT1002_03663 0.84 -1.7
4,096,279 - MIT1002_03663 0.86 -2.4
4,096,281 + MIT1002_03663 0.87 -0.4
4,096,281 + MIT1002_03663 0.87 -1.3
4,096,281 + MIT1002_03663 0.87 -2.1
4,096,289 - MIT1002_03663 0.89 -1.0
4,096,298 + -0.2
4,096,907 - MIT1002_03664 0.83 -1.7
4,097,046 - -0.9
4,097,082 - -0.3
4,097,157 + +0.9
4,097,165 - -1.6

Or see this region's nucleotide sequence