Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03578

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
4,003,015	-		MIT1002_03577	0.44	+1.8
4,003,120	-		MIT1002_03577	0.51	-0.8
4,003,160	+		MIT1002_03577	0.54	-0.7
4,003,160	+		MIT1002_03577	0.54	-2.0
4,003,160	+		MIT1002_03577	0.54	+0.2
4,003,168	-		MIT1002_03577	0.55	-1.0
4,003,173	-		MIT1002_03577	0.55	-2.1
4,003,178	-		MIT1002_03577	0.55	-0.8
4,003,268	+		MIT1002_03577	0.62	+1.1
4,003,268	+		MIT1002_03577	0.62	-1.5
4,003,276	-		MIT1002_03577	0.62	+0.8
4,003,276	-		MIT1002_03577	0.62	-0.1
4,003,276	-		MIT1002_03577	0.62	+0.8
4,003,276	-		MIT1002_03577	0.62	+0.4
4,003,363	+		MIT1002_03577	0.68	-0.1
4,003,436	+		MIT1002_03577	0.73	+0.2
4,003,491	+		MIT1002_03577	0.77	-0.3
4,003,498	+		MIT1002_03577	0.78	+1.8
4,003,592	+		MIT1002_03577	0.84	-1.3
4,003,594	-		MIT1002_03577	0.84	-0.5
4,003,599	+		MIT1002_03577	0.85	+0.5
4,003,599	+		MIT1002_03577	0.85	-0.1
4,003,604	+		MIT1002_03577	0.85	+1.5
4,003,604	+		MIT1002_03577	0.85	-1.6
4,003,607	-		MIT1002_03577	0.85	-1.1
4,003,607	-		MIT1002_03577	0.85	-0.6
4,003,607	-		MIT1002_03577	0.85	+0.4
4,003,612	-		MIT1002_03577	0.86	-0.6
4,003,629	+		MIT1002_03577	0.87	-0.8
4,003,637	-		MIT1002_03577	0.87	-0.4
4,003,646	+		MIT1002_03577	0.88	+2.2
4,003,646	-		MIT1002_03577	0.88	-0.4
4,003,702	-				+1.2
4,003,713	-				-1.1
4,003,728	+				-0.5
4,003,728	+				+0.6
4,003,736	-				+1.5
4,003,803	-				+0.3
4,003,811	-				-0.4
4,003,848	-				-0.7
4,003,994	+				-0.1
4,004,000	-				-2.1
4,004,001	-				-1.1
4,004,118	-		MIT1002_03578	0.15	-0.3
4,004,139	+		MIT1002_03578	0.16	+1.0
4,004,168	-		MIT1002_03578	0.18	-2.2
4,004,248	+		MIT1002_03578	0.25	-0.2
4,004,253	+		MIT1002_03578	0.25	-1.5
4,004,521	+		MIT1002_03578	0.46	-1.3
4,004,538	-		MIT1002_03578	0.47	-1.7
4,004,555	-		MIT1002_03578	0.48	+0.9
4,004,557	-		MIT1002_03578	0.48	+1.6
4,004,658	-		MIT1002_03578	0.56	+0.6
4,004,669	+		MIT1002_03578	0.57	+0.9
4,004,716	-		MIT1002_03578	0.61	-1.9
4,004,755	+		MIT1002_03578	0.64	-0.6
4,004,831	+		MIT1002_03578	0.69	-0.1
4,004,869	+		MIT1002_03578	0.72	-0.2
4,004,877	-		MIT1002_03578	0.73	-2.2
4,005,018	-		MIT1002_03578	0.84	-0.9
4,005,108	+				+0.6
4,005,116	-				+0.8
4,005,116	-				-1.2
4,005,128	-				+2.4
4,005,142	-				-1.2
4,005,162	-				-2.3
4,005,247	+				-0.7
4,005,255	-				+0.5
4,005,255	-				+3.1