Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03233

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
3,601,321	+				+0.8
3,601,377	-		MIT1002_03232	0.14	+0.4
3,601,472	-		MIT1002_03232	0.23	-0.1
3,601,487	-		MIT1002_03232	0.24	-2.4
3,601,492	-		MIT1002_03232	0.25	+1.3
3,601,609	+		MIT1002_03232	0.36	+1.1
3,601,612	-		MIT1002_03232	0.36	-0.3
3,601,617	-		MIT1002_03232	0.37	-0.2
3,601,617	-		MIT1002_03232	0.37	-2.5
3,601,633	+		MIT1002_03232	0.38	+1.8
3,601,645	-		MIT1002_03232	0.40	+0.7
3,601,733	-		MIT1002_03232	0.48	-1.1
3,601,826	-		MIT1002_03232	0.57	+0.3
3,601,831	-		MIT1002_03232	0.57	-0.1
3,601,839	+		MIT1002_03232	0.58	+0.5
3,601,854	-		MIT1002_03232	0.60	-1.1
3,601,854	-		MIT1002_03232	0.60	+2.9
3,601,977	+		MIT1002_03232	0.71	+0.3
3,602,079	-		MIT1002_03232	0.81	+0.5
3,602,081	+		MIT1002_03232	0.81	+2.6
3,602,136	-		MIT1002_03232	0.87	+0.4
3,602,194	-				-0.2
3,602,270	+				-0.4
3,602,277	+				-0.5
3,602,277	+				-0.5
3,602,285	-				+1.3
3,602,354	+				+0.0
3,602,362	-				+0.7
3,602,549	+		MIT1002_03233	0.21	+1.0
3,602,549	+		MIT1002_03233	0.21	+0.5
3,602,566	+		MIT1002_03233	0.22	-0.1
3,602,574	-		MIT1002_03233	0.23	-0.8
3,602,581	+		MIT1002_03233	0.23	-0.2
3,602,590	-		MIT1002_03233	0.24	+0.4
3,602,594	+		MIT1002_03233	0.24	-0.9
3,602,608	+		MIT1002_03233	0.25	-0.3
3,602,608	+		MIT1002_03233	0.25	-1.1
3,602,623	+		MIT1002_03233	0.26	+0.4
3,602,725	+		MIT1002_03233	0.34	-0.2
3,602,937	+		MIT1002_03233	0.51	-1.8
3,602,937	+		MIT1002_03233	0.51	-0.2
3,603,115	+		MIT1002_03233	0.64	-0.1
3,603,138	-		MIT1002_03233	0.66	+0.8
3,603,167	+		MIT1002_03233	0.68	-1.4
3,603,172	+		MIT1002_03233	0.69	-1.9
3,603,175	-		MIT1002_03233	0.69	-0.9
3,603,180	-		MIT1002_03233	0.69	+0.6
3,603,215	+		MIT1002_03233	0.72	-1.5
3,603,324	-		MIT1002_03233	0.81	-1.0
3,603,346	-		MIT1002_03233	0.82	-1.4
3,603,357	-		MIT1002_03233	0.83	+0.2
3,603,363	-		MIT1002_03233	0.84	-0.8
3,603,424	-		MIT1002_03233	0.88	+1.0
3,603,452	-				+1.3
3,603,457	+				+0.3
3,603,492	-				+1.0
3,603,557	-				+2.1
3,603,589	+				-0.8
3,603,589	+				-0.4
3,603,589	+				+0.1
3,603,597	-				+0.2
3,603,597	-				-2.0
3,603,643	+				+1.3
3,603,648	+				-1.5
3,603,648	+				-0.2
3,603,653	+				+0.4
3,603,670	+				+0.0
3,603,732	+				-2.7
3,603,798	+				+1.8
3,603,838	+				-0.5
3,603,838	+				+1.2
3,603,838	+				-0.9
3,603,838	+				+2.9
3,603,846	-				-0.5
3,603,851	+				+1.1
3,603,851	-				-0.4
3,603,887	+				-0.3
3,603,909	+				-1.1
3,603,912	+				+1.2
3,603,914	+				+0.1
3,603,917	-				+1.3
3,603,938	+				-0.6
3,603,943	+				+0.7
3,603,943	+				+0.1
3,603,946	-				-0.4
3,603,946	-				+0.1
3,603,951	-				-0.2
3,603,951	-				+1.0
3,604,043	+				-0.5
3,604,043	+				-0.4
3,604,048	+				-0.1
3,604,051	-				-1.1
3,604,066	-				-1.5
3,604,102	+				+2.6
3,604,102	+				+0.9
3,604,110	-				-1.3
3,604,110	-				+1.6
3,604,112	-				+1.5
3,604,174	+				-1.5
3,604,221	-				+0.5
3,604,361	-		MIT1002_03235	0.27	+0.6
3,604,378	+		MIT1002_03235	0.31	-1.8
3,604,383	+		MIT1002_03235	0.32	-0.6
3,604,386	-		MIT1002_03235	0.32	+0.6
3,604,393	+		MIT1002_03235	0.34	+0.8
3,604,442	+		MIT1002_03235	0.43	+0.4
3,604,442	+		MIT1002_03235	0.43	+1.2
3,604,442	+		MIT1002_03235	0.43	-2.3
3,604,442	+		MIT1002_03235	0.43	+1.6
3,604,450	-		MIT1002_03235	0.44	-0.6
3,604,450	-		MIT1002_03235	0.44	+0.6
3,604,460	-		MIT1002_03235	0.46	+0.1
3,604,488	-		MIT1002_03235	0.52	-0.6
3,604,530	+		MIT1002_03235	0.60	-1.7
3,604,530	+		MIT1002_03235	0.60	-0.8
3,604,538	-		MIT1002_03235	0.61	-0.4
3,604,540	-		MIT1002_03235	0.62	+1.8