Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03100

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
3,454,586	-				-0.6
3,454,586	-				-0.4
3,454,593	-				-2.1
3,454,632	-				+0.3
3,454,766	-				+1.0
3,454,796	-				+0.5
3,454,832	-		MIT1002_03099	0.15	+0.6
3,454,832	-		MIT1002_03099	0.15	-0.8
3,454,832	-		MIT1002_03099	0.15	+0.1
3,454,876	-		MIT1002_03099	0.22	+0.1
3,454,876	-		MIT1002_03099	0.22	+0.2
3,454,876	-		MIT1002_03099	0.22	-0.2
3,454,956	-		MIT1002_03099	0.35	+0.2
3,455,041	-		MIT1002_03099	0.48	+0.6
3,455,125	+		MIT1002_03099	0.61	+1.4
3,455,152	-		MIT1002_03099	0.66	-0.1
3,455,185	+		MIT1002_03099	0.71	+0.8
3,455,218	-		MIT1002_03099	0.76	-0.3
3,455,255	+		MIT1002_03099	0.82	+0.6
3,455,255	+		MIT1002_03099	0.82	+0.1
3,455,255	+		MIT1002_03099	0.82	+0.2
3,455,255	+		MIT1002_03099	0.82	-0.5
3,455,263	-		MIT1002_03099	0.83	+0.1
3,455,311	+				-0.5
3,455,377	+				-0.5
3,455,413	+				-0.2
3,455,436	+				-0.5
3,455,512	-				+0.1
3,455,590	-				-0.1
3,455,703	-		MIT1002_03100	0.21	-2.5
3,455,712	-		MIT1002_03100	0.23	-0.5
3,455,718	+		MIT1002_03100	0.24	-1.4
3,455,778	+		MIT1002_03100	0.34	+1.0
3,455,833	+		MIT1002_03100	0.44	-0.8
3,455,833	+		MIT1002_03100	0.44	-0.1
3,455,841	-		MIT1002_03100	0.46	+1.2
3,455,841	-		MIT1002_03100	0.46	-0.6
3,455,841	-		MIT1002_03100	0.46	-0.3
3,455,857	+		MIT1002_03100	0.48	-1.5
3,455,899	+		MIT1002_03100	0.56	-0.3
3,455,900	+		MIT1002_03100	0.56	+0.3
3,455,900	+		MIT1002_03100	0.56	+1.6
3,455,908	-		MIT1002_03100	0.58	+0.2
3,455,908	-		MIT1002_03100	0.58	-0.1
3,455,953	-		MIT1002_03100	0.66	-0.2
3,455,953	-		MIT1002_03100	0.66	-2.3
3,455,969	+		MIT1002_03100	0.68	-0.3
3,455,969	+		MIT1002_03100	0.68	+1.8
3,455,969	+		MIT1002_03100	0.68	-0.0
3,455,969	+		MIT1002_03100	0.68	-0.1
3,455,969	+		MIT1002_03100	0.68	+1.0
3,455,969	+		MIT1002_03100	0.68	-0.7
3,455,977	-		MIT1002_03100	0.70	+0.9
3,455,977	-		MIT1002_03100	0.70	-0.5
3,455,977	-		MIT1002_03100	0.70	-0.4
3,455,977	-		MIT1002_03100	0.70	-0.5
3,455,977	-		MIT1002_03100	0.70	+0.8
3,455,977	-		MIT1002_03100	0.70	-0.1
3,455,977	-		MIT1002_03100	0.70	+0.1
3,455,977	-		MIT1002_03100	0.70	-1.2
3,455,977	-		MIT1002_03100	0.70	+1.8
3,455,981	+		MIT1002_03100	0.71	+0.2
3,455,981	+		MIT1002_03100	0.71	+1.7
3,455,981	+		MIT1002_03100	0.71	-2.4
3,455,989	-		MIT1002_03100	0.72	+0.5
3,456,039	+		MIT1002_03100	0.81	-0.3
3,456,047	+		MIT1002_03100	0.82	+0.5
3,456,181	+				-0.2
3,456,197	+				-0.3
3,456,202	+				-1.0
3,456,292	-		MIT1002_03101	0.13	-1.2
3,456,321	-		MIT1002_03101	0.18	-0.8
3,456,337	+		MIT1002_03101	0.20	-1.1
3,456,341	+		MIT1002_03101	0.21	-0.1
3,456,438	+		MIT1002_03101	0.35	+0.6
3,456,479	-		MIT1002_03101	0.42	-0.4
3,456,516	+		MIT1002_03101	0.47	-1.0
3,456,521	+		MIT1002_03101	0.48	-1.1
3,456,576	+		MIT1002_03101	0.56	-0.4
3,456,584	-		MIT1002_03101	0.58	-0.7
3,456,648	+		MIT1002_03101	0.67	-1.0
3,456,669	-		MIT1002_03101	0.70	-0.2
3,456,713	-		MIT1002_03101	0.77	-0.7
3,456,771	+		MIT1002_03101	0.86	-1.4
3,456,786	+		MIT1002_03101	0.88	-0.3
3,456,822	+				+0.4
3,456,867	-				+0.6
3,456,867	-				+0.7
3,456,872	-				+1.6
3,456,925	+				-0.5
3,456,933	-				-0.4
3,456,954	+				+0.2
3,456,970	+				+0.7
3,457,003	+				-0.5
3,457,011	-				+2.4
3,457,011	-				+0.7
3,457,011	-				-0.2
3,457,011	-				-0.0
3,457,015	+				-0.1
3,457,057	+				-1.2
3,457,127	+		MIT1002_03102	0.17	-0.0