Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03085

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
3,435,967	-		MIT1002_03084	0.42	-1.1
3,435,967	-		MIT1002_03084	0.42	-2.9
3,436,094	+		MIT1002_03084	0.51	+0.1
3,436,096	+		MIT1002_03084	0.52	-3.8
3,436,104	-		MIT1002_03084	0.52	-2.2
3,436,104	-		MIT1002_03084	0.52	-0.5
3,436,104	-		MIT1002_03084	0.52	-2.2
3,436,116	-		MIT1002_03084	0.53	-0.4
3,436,119	+		MIT1002_03084	0.53	-3.5
3,436,119	+		MIT1002_03084	0.53	-3.5
3,436,127	-		MIT1002_03084	0.54	-2.2
3,436,195	-		MIT1002_03084	0.59	-0.8
3,436,240	-		MIT1002_03084	0.63	-7.8
3,436,246	-		MIT1002_03084	0.63	-2.4
3,436,290	+		MIT1002_03084	0.67	-8.6
3,436,431	+		MIT1002_03084	0.78	-2.1
3,436,439	-		MIT1002_03084	0.78	-3.5
3,436,514	+		MIT1002_03084	0.84	-2.2
3,436,517	+		MIT1002_03084	0.84	-2.3
3,436,519	+		MIT1002_03084	0.85	-1.5
3,436,537	-		MIT1002_03084	0.86	-0.7
3,436,551	+		MIT1002_03084	0.87	-2.6
3,436,556	+		MIT1002_03084	0.87	-0.9
3,436,559	-		MIT1002_03084	0.88	-3.7
3,436,654	+				-0.7
3,436,657	+				-2.1
3,436,738	+				-1.7
3,436,746	-				-3.2
3,436,746	-				-1.6
3,436,748	-				-1.8
3,436,753	+				-3.8
3,436,761	-				-3.5
3,436,868	-				+0.1
3,436,873	+				-3.1
3,436,888	-				-2.6
3,436,901	-				-2.9
3,437,133	+		MIT1002_03085	0.30	-2.0
3,437,181	-		MIT1002_03085	0.35	-5.9
3,437,197	-		MIT1002_03085	0.37	-1.3
3,437,199	+		MIT1002_03085	0.37	-1.9
3,437,216	-		MIT1002_03085	0.39	-1.3
3,437,236	+		MIT1002_03085	0.41	+0.6
3,437,258	+		MIT1002_03085	0.43	-2.2
3,437,266	-		MIT1002_03085	0.44	-1.4
3,437,266	-		MIT1002_03085	0.44	-1.6
3,437,266	-		MIT1002_03085	0.44	-4.3
3,437,266	-		MIT1002_03085	0.44	-1.8
3,437,317	-		MIT1002_03085	0.49	-3.3
3,437,531	-		MIT1002_03085	0.72	-2.7
3,437,540	-		MIT1002_03085	0.73	-2.9
3,437,608	-		MIT1002_03085	0.80	-2.1
3,437,705	-				-3.8
3,437,734	-				-0.8
3,437,932	+				-2.9
3,437,966	-				+0.1
3,438,017	+				-3.5
3,438,033	-				-1.9
3,438,068	+				-0.9
3,438,179	+				-1.2
3,438,234	-		MIT1002_03086	0.11	-2.1
3,438,272	+		MIT1002_03086	0.12	-1.9
3,438,280	-		MIT1002_03086	0.13	-3.1
3,438,294	+		MIT1002_03086	0.13	-3.9
3,438,294	+		MIT1002_03086	0.13	-3.9
3,438,302	-		MIT1002_03086	0.14	-4.0
3,438,381	-		MIT1002_03086	0.17	-2.4
3,438,405	+		MIT1002_03086	0.18	-1.5
3,438,413	-		MIT1002_03086	0.18	-4.2
3,438,475	+		MIT1002_03086	0.21	-1.5
3,438,483	+		MIT1002_03086	0.21	-5.6
3,438,485	+		MIT1002_03086	0.21	-2.4
3,438,538	-		MIT1002_03086	0.23	-1.8
3,438,540	+		MIT1002_03086	0.23	-0.8
3,438,548	-		MIT1002_03086	0.24	-5.3
3,438,596	-		MIT1002_03086	0.26	-4.9
3,438,596	-		MIT1002_03086	0.26	-3.7
3,438,601	-		MIT1002_03086	0.26	-1.8
3,438,629	-		MIT1002_03086	0.27	-5.0
3,438,646	+		MIT1002_03086	0.28	-3.0
3,438,656	+		MIT1002_03086	0.28	-0.9
3,438,664	-		MIT1002_03086	0.28	-3.4
3,438,664	-		MIT1002_03086	0.28	-3.6
3,438,664	-		MIT1002_03086	0.28	-3.5
3,438,672	-		MIT1002_03086	0.29	-1.7
3,438,679	-		MIT1002_03086	0.29	-3.3