Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03077 and MIT1002_03078 are separated by 15 nucleotides MIT1002_03078 and MIT1002_03079 are separated by 22 nucleotides MIT1002_03079 and MIT1002_03080 are separated by 245 nucleotides MIT1002_03080 and MIT1002_03081 are separated by 14 nucleotides
MIT1002_03077: MIT1002_03077 - hypothetical protein, at 3,429,922 to 3,430,698
_03077
MIT1002_03078: MIT1002_03078 - hypothetical protein, at 3,430,714 to 3,430,938
_03078
MIT1002_03079: MIT1002_03079 - hypothetical protein, at 3,430,961 to 3,431,095
_03079
MIT1002_03080: MIT1002_03080 - Transaldolase B, at 3,431,341 to 3,432,300
_03080
MIT1002_03081: MIT1002_03081 - Glucose-6-phosphate isomerase, at 3,432,315 to 3,433,964
_03081
Position (kb) 3431
3432
3433 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.423 kb on + strand, within MIT1002_03077 at 3430.445 kb on + strand, within MIT1002_03077 at 3430.571 kb on + strand, within MIT1002_03077 at 3430.696 kb on + strand at 3430.704 kb on - strand at 3430.713 kb on - strand at 3430.727 kb on + strand at 3430.888 kb on + strand, within MIT1002_03078 at 3430.896 kb on - strand, within MIT1002_03078 at 3430.896 kb on - strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.978 kb on + strand, within MIT1002_03079 at 3430.978 kb on + strand, within MIT1002_03079 at 3430.989 kb on + strand, within MIT1002_03079 at 3431.154 kb on + strand at 3431.154 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand at 3432.972 kb on + strand, within MIT1002_03081 at 3433.033 kb on - strand, within MIT1002_03081 at 3433.246 kb on + strand, within MIT1002_03081
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 3,430,354 + MIT1002_03077 0.56 -2.0 3,430,354 + MIT1002_03077 0.56 -0.7 3,430,354 + MIT1002_03077 0.56 +0.1 3,430,354 + MIT1002_03077 0.56 +0.8 3,430,362 - MIT1002_03077 0.57 +0.5 3,430,362 - MIT1002_03077 0.57 +0.3 3,430,362 - MIT1002_03077 0.57 +0.8 3,430,362 - MIT1002_03077 0.57 +1.0 3,430,362 - MIT1002_03077 0.57 +0.4 3,430,423 + MIT1002_03077 0.64 +0.9 3,430,445 + MIT1002_03077 0.67 -0.9 3,430,571 + MIT1002_03077 0.84 +1.8 3,430,696 + -0.9 3,430,704 - -0.3 3,430,713 - +2.4 3,430,727 + +1.7 3,430,888 + MIT1002_03078 0.77 +0.6 3,430,896 - MIT1002_03078 0.81 -0.3 3,430,896 - MIT1002_03078 0.81 +2.3 3,430,901 + MIT1002_03078 0.83 +0.5 3,430,901 + MIT1002_03078 0.83 +3.0 3,430,901 + MIT1002_03078 0.83 +1.4 3,430,901 + MIT1002_03078 0.83 +1.5 3,430,978 + MIT1002_03079 0.13 +0.8 3,430,978 + MIT1002_03079 0.13 +1.4 3,430,989 + MIT1002_03079 0.21 -0.0 3,431,154 + -0.3 3,431,154 + -1.9 3,431,252 + -0.5 3,431,252 + +0.6 3,431,252 + -1.8 3,431,252 + +0.2 3,432,972 + MIT1002_03081 0.40 -0.9 3,433,033 - MIT1002_03081 0.44 +0.6 3,433,246 + MIT1002_03081 0.56 +0.1
Or see this region's nucleotide sequence