Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02869

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
3,183,361	-		MIT1002_02868	0.18	-0.1
3,183,361	-		MIT1002_02868	0.18	-1.1
3,183,566	+		MIT1002_02868	0.36	+0.9
3,183,657	-		MIT1002_02868	0.44	+1.2
3,183,775	+		MIT1002_02868	0.54	+0.6
3,183,807	+		MIT1002_02868	0.57	-0.3
3,183,843	-		MIT1002_02868	0.60	+0.9
3,183,843	-		MIT1002_02868	0.60	-1.9
3,184,005	+		MIT1002_02868	0.74	-0.8
3,184,023	+		MIT1002_02868	0.76	+3.1
3,184,023	+		MIT1002_02868	0.76	-0.5
3,184,023	-		MIT1002_02868	0.76	+1.2
3,184,031	-		MIT1002_02868	0.76	-0.2
3,184,047	+		MIT1002_02868	0.78	-0.1
3,184,081	+		MIT1002_02868	0.81	-1.0
3,184,118	-		MIT1002_02868	0.84	+2.2
3,184,354	-				-1.3
3,184,406	+				-1.5
3,184,458	-		MIT1002_02869	0.11	-0.7
3,184,468	+		MIT1002_02869	0.11	-1.1
3,184,517	+		MIT1002_02869	0.15	-0.8
3,184,518	+		MIT1002_02869	0.15	+1.4
3,184,564	-		MIT1002_02869	0.18	+1.1
3,184,643	-		MIT1002_02869	0.23	+0.8
3,184,652	+		MIT1002_02869	0.24	+0.3
3,184,677	+		MIT1002_02869	0.26	-0.8
3,184,696	+		MIT1002_02869	0.27	-1.4
3,184,704	-		MIT1002_02869	0.27	+0.6
3,184,712	-		MIT1002_02869	0.28	+1.0
3,184,712	-		MIT1002_02869	0.28	-1.5
3,184,887	-		MIT1002_02869	0.40	+0.0
3,184,929	-		MIT1002_02869	0.43	-0.2
3,185,010	+		MIT1002_02869	0.48	-1.8
3,185,018	-		MIT1002_02869	0.49	-0.6
3,185,018	-		MIT1002_02869	0.49	-0.2
3,185,188	-		MIT1002_02869	0.60	+0.2
3,185,190	-		MIT1002_02869	0.60	-1.5
3,185,265	-		MIT1002_02869	0.66	-0.2
3,185,278	+		MIT1002_02869	0.66	+0.3
3,185,332	+		MIT1002_02869	0.70	+0.1
3,185,335	+		MIT1002_02869	0.70	-1.0
3,185,343	-		MIT1002_02869	0.71	-1.9
3,185,345	+		MIT1002_02869	0.71	+1.3
3,185,345	+		MIT1002_02869	0.71	-1.0
3,185,353	-		MIT1002_02869	0.72	+1.0
3,185,353	-		MIT1002_02869	0.72	-1.5
3,185,353	-		MIT1002_02869	0.72	-0.8
3,185,392	+		MIT1002_02869	0.74	+0.3
3,185,392	+		MIT1002_02869	0.74	-3.8
3,185,473	+		MIT1002_02869	0.80	-1.3
3,185,475	+		MIT1002_02869	0.80	+2.2
3,185,633	-				-0.1
3,185,639	+				-1.1
3,185,648	-				+0.6
3,185,689	-				-0.8
3,185,721	-				-1.3
3,185,779	+				-0.7
3,185,779	+				-0.9
3,185,793	+				+1.8
3,185,831	+				-2.0
3,185,850	-				-1.6
3,185,858	-				-0.2
3,185,940	-		MIT1002_02870	0.15	-2.1
3,185,990	+		MIT1002_02870	0.21	-0.7
3,186,076	-		MIT1002_02870	0.31	-1.2
3,186,201	+		MIT1002_02870	0.46	-0.3
3,186,237	-		MIT1002_02870	0.50	-2.0
3,186,240	+		MIT1002_02870	0.50	-2.4
3,186,293	-		MIT1002_02870	0.57	+1.6
3,186,314	-		MIT1002_02870	0.59	-0.0
3,186,316	-		MIT1002_02870	0.60	-1.6
3,186,370	+		MIT1002_02870	0.66	-0.7
3,186,370	+		MIT1002_02870	0.66	+1.0
3,186,378	-		MIT1002_02870	0.67	-1.1
3,186,388	+		MIT1002_02870	0.68	-1.3
3,186,409	+		MIT1002_02870	0.71	-1.4
3,186,409	+		MIT1002_02870	0.71	-1.5
3,186,442	+		MIT1002_02870	0.75	+0.0
3,186,442	+		MIT1002_02870	0.75	+0.3
3,186,442	+		MIT1002_02870	0.75	+0.2
3,186,442	+		MIT1002_02870	0.75	+0.0
3,186,450	-		MIT1002_02870	0.75	-0.5
3,186,450	-		MIT1002_02870	0.75	-0.8
3,186,450	-		MIT1002_02870	0.75	+0.6
3,186,450	-		MIT1002_02870	0.75	-1.7
3,186,450	-		MIT1002_02870	0.75	-2.2
3,186,452	+		MIT1002_02870	0.76	-0.7
3,186,460	-		MIT1002_02870	0.77	-2.1
3,186,462	+		MIT1002_02870	0.77	-1.3
3,186,470	-		MIT1002_02870	0.78	-2.4
3,186,520	+		MIT1002_02870	0.84	-2.1
3,186,541	+		MIT1002_02870	0.86	-1.2
3,186,541	+		MIT1002_02870	0.86	-1.2
3,186,541	+		MIT1002_02870	0.86	+0.2
3,186,606	-				-1.5
3,186,616	+				-0.5
3,186,690	-				-2.0
3,186,765	+				-1.5