Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02551

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,843,961	+		MIT1002_02550	0.48	+3.8
2,843,973	+		MIT1002_02550	0.49	-1.9
2,843,986	-		MIT1002_02550	0.50	+0.2
2,844,008	+		MIT1002_02550	0.51	-0.2
2,844,038	+		MIT1002_02550	0.53	+0.1
2,844,038	+		MIT1002_02550	0.53	-0.1
2,844,038	+		MIT1002_02550	0.53	-2.3
2,844,038	+		MIT1002_02550	0.53	-0.7
2,844,046	-		MIT1002_02550	0.54	-0.3
2,844,046	-		MIT1002_02550	0.54	+0.3
2,844,046	-		MIT1002_02550	0.54	-0.3
2,844,046	-		MIT1002_02550	0.54	+0.3
2,844,046	-		MIT1002_02550	0.54	-0.3
2,844,058	-		MIT1002_02550	0.55	+0.4
2,844,072	+		MIT1002_02550	0.55	-0.6
2,844,080	-		MIT1002_02550	0.56	+0.1
2,844,120	+		MIT1002_02550	0.59	-1.8
2,844,130	+		MIT1002_02550	0.59	-0.7
2,844,138	-		MIT1002_02550	0.60	-0.4
2,844,138	-		MIT1002_02550	0.60	-0.1
2,844,393	+		MIT1002_02550	0.77	-0.6
2,844,393	+		MIT1002_02550	0.77	-0.4
2,844,393	+		MIT1002_02550	0.77	-1.2
2,844,393	+		MIT1002_02550	0.77	-0.3
2,844,398	+		MIT1002_02550	0.77	-3.1
2,844,401	-		MIT1002_02550	0.78	-0.4
2,844,401	-		MIT1002_02550	0.78	-1.2
2,844,401	-		MIT1002_02550	0.78	+0.7
2,844,401	-		MIT1002_02550	0.78	-1.1
2,844,401	-		MIT1002_02550	0.78	-0.9
2,844,406	-		MIT1002_02550	0.78	-1.4
2,844,409	-		MIT1002_02550	0.78	-0.8
2,844,420	-		MIT1002_02550	0.79	-2.4
2,844,447	+		MIT1002_02550	0.81	-0.4
2,844,452	+		MIT1002_02550	0.81	+0.4
2,844,455	-		MIT1002_02550	0.81	+0.0
2,844,541	-		MIT1002_02550	0.87	-0.9
2,844,543	-		MIT1002_02550	0.87	-0.5
2,844,547	+		MIT1002_02550	0.87	-0.6
2,844,584	+		MIT1002_02550	0.90	-0.6
2,844,592	-				-1.3
2,844,593	-				-0.3
2,844,634	-				+0.4
2,844,640	+				-1.0
2,844,652	-				-0.1
2,844,658	+				-0.1
2,844,669	-				-0.9
2,844,723	+				+0.9
2,844,739	-				-0.5
2,844,856	+				+2.7
2,844,864	-				+0.2
2,844,999	+				-0.2
2,845,058	+		MIT1002_02551	0.14	-1.2
2,845,075	+		MIT1002_02551	0.17	-1.4
2,845,088	+		MIT1002_02551	0.19	+1.6
2,845,088	+		MIT1002_02551	0.19	-0.1
2,845,111	-		MIT1002_02551	0.22	+0.3
2,845,115	+		MIT1002_02551	0.23	-0.2
2,845,125	+		MIT1002_02551	0.24	-1.1
2,845,149	-		MIT1002_02551	0.28	-0.8
2,845,201	+		MIT1002_02551	0.35	+1.8
2,845,208	+		MIT1002_02551	0.36	+0.1
2,845,215	-		MIT1002_02551	0.37	+0.7
2,845,216	-		MIT1002_02551	0.38	-0.5
2,845,216	-		MIT1002_02551	0.38	+0.2
2,845,269	-		MIT1002_02551	0.45	+2.2
2,845,292	-		MIT1002_02551	0.49	+0.6
2,845,320	+		MIT1002_02551	0.53	+0.5
2,845,322	+		MIT1002_02551	0.53	-1.4
2,845,328	-		MIT1002_02551	0.54	+3.1
2,845,404	+		MIT1002_02551	0.65	-0.5
2,845,519	+		MIT1002_02551	0.82	+1.2
2,845,520	-		MIT1002_02551	0.82	+2.0
2,845,529	-		MIT1002_02551	0.83	-0.0
2,845,567	+		MIT1002_02551	0.89	-0.6
2,845,606	+				+0.7
2,845,647	-				+0.6
2,845,658	-				+1.8
2,845,660	+				+1.1
2,845,703	-				-1.1
2,845,763	+				-0.7
2,845,858	-		MIT1002_02552	0.18	-0.3
2,845,858	-		MIT1002_02552	0.18	-2.2
2,845,858	-		MIT1002_02552	0.18	+2.5
2,846,084	+		MIT1002_02552	0.37	+0.7
2,846,100	+		MIT1002_02552	0.38	+0.2
2,846,169	+		MIT1002_02552	0.44	-0.7
2,846,175	-		MIT1002_02552	0.44	+0.9
2,846,175	-		MIT1002_02552	0.44	-0.4
2,846,177	-		MIT1002_02552	0.44	+0.0
2,846,248	+		MIT1002_02552	0.50	+1.5
2,846,256	-		MIT1002_02552	0.51	-1.4
2,846,403	+		MIT1002_02552	0.63	+0.3
2,846,403	+		MIT1002_02552	0.63	-0.1
2,846,411	-		MIT1002_02552	0.64	-0.7
2,846,440	-		MIT1002_02552	0.66	+1.5
2,846,526	-		MIT1002_02552	0.73	+0.1
2,846,536	+		MIT1002_02552	0.74	+0.1
2,846,536	+		MIT1002_02552	0.74	-1.1
2,846,584	+		MIT1002_02552	0.78	-0.2
2,846,640	-		MIT1002_02552	0.83	-0.2