Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02455

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,744,358	-		MIT1002_02454	0.71	+0.9
2,744,418	+		MIT1002_02454	0.73	-0.2
2,744,488	+		MIT1002_02454	0.76	+0.2
2,744,516	+		MIT1002_02454	0.77	+1.7
2,744,524	-		MIT1002_02454	0.77	+1.0
2,744,621	+		MIT1002_02454	0.81	-0.6
2,744,652	+		MIT1002_02454	0.82	-0.3
2,744,667	+		MIT1002_02454	0.83	-1.6
2,744,778	-		MIT1002_02454	0.87	-0.2
2,744,807	+		MIT1002_02454	0.88	+1.2
2,744,836	+		MIT1002_02454	0.89	-1.4
2,744,937	-				+0.9
2,745,022	-				+2.5
2,745,062	-				+1.4
2,745,114	-				+0.1
2,745,118	-				+6.4
2,745,118	-				+0.1
2,745,157	-				-0.3
2,745,346	+				-0.3
2,745,411	+				+0.3
2,745,444	+				+0.2
2,745,466	+				+0.2
2,745,466	+				-0.7
2,745,471	+				-0.6
2,745,472	-				+0.3
2,745,482	-				-1.1
2,745,601	+		MIT1002_02455	0.13	+1.2
2,745,626	-		MIT1002_02455	0.14	-1.3
2,745,674	-		MIT1002_02455	0.17	-0.1
2,745,721	+		MIT1002_02455	0.19	-0.4
2,745,751	-		MIT1002_02455	0.21	-1.0
2,745,768	-		MIT1002_02455	0.21	-0.3
2,745,781	-		MIT1002_02455	0.22	+0.0
2,745,897	+		MIT1002_02455	0.28	-1.2
2,745,897	+		MIT1002_02455	0.28	-0.5
2,745,902	+		MIT1002_02455	0.28	+0.1
2,745,905	-		MIT1002_02455	0.29	-1.0
2,745,905	-		MIT1002_02455	0.29	-1.3
2,745,915	-		MIT1002_02455	0.29	-0.1
2,745,915	-		MIT1002_02455	0.29	+0.9
2,745,915	-		MIT1002_02455	0.29	-1.0
2,745,975	-		MIT1002_02455	0.32	+1.3
2,746,029	+		MIT1002_02455	0.35	+0.1
2,746,047	+		MIT1002_02455	0.36	-1.1
2,746,180	+		MIT1002_02455	0.43	-1.0
2,746,190	+		MIT1002_02455	0.43	+2.1
2,746,193	-		MIT1002_02455	0.44	-0.0
2,746,288	-		MIT1002_02455	0.49	+0.6
2,746,288	-		MIT1002_02455	0.49	-0.4
2,746,304	-		MIT1002_02455	0.49	-0.4
2,746,310	+		MIT1002_02455	0.50	+0.8
2,746,310	-		MIT1002_02455	0.50	-0.5
2,746,374	-		MIT1002_02455	0.53	-0.8
2,746,431	-		MIT1002_02455	0.56	+0.8
2,746,431	-		MIT1002_02455	0.56	-0.7
2,746,480	+		MIT1002_02455	0.59	-0.4
2,746,515	+		MIT1002_02455	0.60	-1.5
2,746,524	+		MIT1002_02455	0.61	-3.1
2,746,539	-		MIT1002_02455	0.62	+0.4
2,746,539	-		MIT1002_02455	0.62	-0.4
2,746,606	+		MIT1002_02455	0.65	-3.9
2,746,651	+		MIT1002_02455	0.67	-0.3
2,746,659	-		MIT1002_02455	0.68	-0.3
2,746,659	-		MIT1002_02455	0.68	-0.5
2,746,659	-		MIT1002_02455	0.68	-0.6
2,746,676	+		MIT1002_02455	0.69	-2.0
2,746,710	-		MIT1002_02455	0.71	-0.1
2,746,727	+		MIT1002_02455	0.71	-1.6
2,746,772	+		MIT1002_02455	0.74	-0.5
2,746,772	+		MIT1002_02455	0.74	-0.5
2,746,780	-		MIT1002_02455	0.74	-0.3
2,746,833	-		MIT1002_02455	0.77	-0.7
2,746,861	+		MIT1002_02455	0.78	-1.4
2,746,873	+		MIT1002_02455	0.79	+0.4
2,746,956	+		MIT1002_02455	0.83	+1.3
2,746,964	-		MIT1002_02455	0.84	-0.6
2,746,974	-		MIT1002_02455	0.84	+0.2
2,746,980	+		MIT1002_02455	0.85	-0.5
2,747,011	-		MIT1002_02455	0.86	-0.7
2,747,042	+		MIT1002_02455	0.88	-0.8
2,747,113	+				+0.5
2,747,115	+				-2.1
2,747,189	+				-1.1
2,747,297	+				+0.8
2,747,302	+				+0.7
2,747,302	+				+0.8
2,747,307	+				-0.8
2,747,315	-				+0.1
2,747,479	+				-0.8
2,747,482	-				-1.5
2,747,492	-				+0.3
2,747,621	+		MIT1002_02456	0.55	-0.5
2,747,629	-		MIT1002_02456	0.58	+0.2
2,747,638	+		MIT1002_02456	0.62	-0.5
2,747,699	+		MIT1002_02456	0.86	+0.7
2,747,699	+		MIT1002_02456	0.86	-0.7
2,747,699	+		MIT1002_02456	0.86	+0.4
2,747,699	+		MIT1002_02456	0.86	+1.7
2,747,699	+		MIT1002_02456	0.86	+0.1
2,747,699	+		MIT1002_02456	0.86	-0.9
2,747,699	+		MIT1002_02456	0.86	-1.0
2,747,699	+		MIT1002_02456	0.86	-0.4
2,747,699	+		MIT1002_02456	0.86	-0.8
2,747,699	+		MIT1002_02456	0.86	+0.5
2,747,699	+		MIT1002_02456	0.86	+0.3
2,747,699	+		MIT1002_02456	0.86	+1.3
2,747,699	+		MIT1002_02456	0.86	-0.8
2,747,699	+		MIT1002_02456	0.86	+1.0
2,747,699	+		MIT1002_02456	0.86	+1.3
2,747,707	-		MIT1002_02456	0.89	-0.7
2,747,707	-		MIT1002_02456	0.89	-0.4
2,747,707	-		MIT1002_02456	0.89	-0.5
2,747,707	-		MIT1002_02456	0.89	-0.2
2,747,707	-		MIT1002_02456	0.89	-0.3
2,747,707	-		MIT1002_02456	0.89	-0.1
2,747,707	-		MIT1002_02456	0.89	+0.0
2,747,707	-		MIT1002_02456	0.89	-0.1
2,747,707	-		MIT1002_02456	0.89	-1.9
2,747,707	-		MIT1002_02456	0.89	+0.6
2,747,707	-		MIT1002_02456	0.89	+1.3
2,747,707	-		MIT1002_02456	0.89	-1.0
2,747,707	-		MIT1002_02456	0.89	-0.3
2,747,707	-		MIT1002_02456	0.89	-0.7
2,747,707	-		MIT1002_02456	0.89	+0.1
2,747,707	-		MIT1002_02456	0.89	+0.3
2,747,819	-				-0.1
2,747,830	+				-1.5
2,747,838	+				+0.0
2,747,838	+				-0.4
2,747,845	+				+0.4
2,747,847	+				+0.0
2,747,858	-				+0.8
2,747,859	+				-0.7
2,747,920	-				-0.1
2,747,957	-		MIT1002_02457	0.15	-1.6
2,748,041	+		MIT1002_02457	0.36	-2.6
2,748,054	+		MIT1002_02457	0.39	+0.1
2,748,160	-		MIT1002_02457	0.65	-1.1
2,748,175	-		MIT1002_02457	0.69	-0.3
2,748,235	-		MIT1002_02457	0.83	+0.5
2,748,240	-		MIT1002_02457	0.85	+0.7
2,748,240	-		MIT1002_02457	0.85	-0.7
2,748,240	-		MIT1002_02457	0.85	-1.5
2,748,247	-		MIT1002_02457	0.86	-0.8
2,748,266	+				+1.0