Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02174

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,425,786	-		MIT1002_02172	0.84	-0.6
2,425,791	-		MIT1002_02172	0.85	+1.8
2,425,958	-				-0.6
2,425,959	+				-1.9
2,425,959	+				-0.1
2,425,995	+				+1.0
2,426,011	+		MIT1002_02173	0.11	-0.4
2,426,165	+		MIT1002_02173	0.32	-0.4
2,426,165	+		MIT1002_02173	0.32	+0.3
2,426,188	-		MIT1002_02173	0.36	-0.6
2,426,201	-		MIT1002_02173	0.37	-0.9
2,426,219	+		MIT1002_02173	0.40	-1.3
2,426,273	+		MIT1002_02173	0.47	+1.7
2,426,364	-		MIT1002_02173	0.60	-0.3
2,426,404	+		MIT1002_02173	0.66	+1.6
2,426,404	+		MIT1002_02173	0.66	-0.3
2,426,404	+		MIT1002_02173	0.66	-0.1
2,426,404	+		MIT1002_02173	0.66	+0.4
2,426,404	+		MIT1002_02173	0.66	-0.1
2,426,404	+		MIT1002_02173	0.66	+1.1
2,426,404	+		MIT1002_02173	0.66	+0.0
2,426,404	+		MIT1002_02173	0.66	-1.5
2,426,404	+		MIT1002_02173	0.66	+0.3
2,426,411	+		MIT1002_02173	0.67	+0.9
2,426,412	-		MIT1002_02173	0.67	+0.9
2,426,412	-		MIT1002_02173	0.67	+0.5
2,426,569	-		MIT1002_02173	0.89	-0.1
2,426,583	-				+1.2
2,426,583	-				-1.4
2,426,583	-				-0.8
2,426,589	+				-0.2
2,426,597	-				-0.0
2,426,608	+				-0.1
2,426,616	-				-0.6
2,426,630	-				-0.2
2,426,632	+				-0.4
2,426,656	+				+0.5
2,426,683	-				+0.9
2,426,780	-				-1.2
2,426,872	-				-0.1
2,426,961	+				+0.2
2,427,033	+				+0.3
2,427,064	-		MIT1002_02174	0.11	+1.0
2,427,069	+		MIT1002_02174	0.11	+0.8
2,427,084	-		MIT1002_02174	0.11	-0.3
2,427,093	+		MIT1002_02174	0.12	-0.1
2,427,118	+		MIT1002_02174	0.12	+0.4
2,427,126	-		MIT1002_02174	0.13	+0.1
2,427,126	-		MIT1002_02174	0.13	-0.3
2,427,135	+		MIT1002_02174	0.13	+1.6
2,427,212	-		MIT1002_02174	0.16	-0.2
2,427,212	-		MIT1002_02174	0.16	-0.5
2,427,212	-		MIT1002_02174	0.16	+0.4
2,427,212	-		MIT1002_02174	0.16	-0.9
2,427,215	-		MIT1002_02174	0.16	-0.3
2,427,249	+		MIT1002_02174	0.17	+0.7
2,427,250	-		MIT1002_02174	0.17	+0.9
2,427,262	+		MIT1002_02174	0.17	-0.6
2,427,270	-		MIT1002_02174	0.18	-0.7
2,427,339	+		MIT1002_02174	0.20	-0.4
2,427,340	+		MIT1002_02174	0.20	+0.9
2,427,347	-		MIT1002_02174	0.20	+1.3
2,427,348	+		MIT1002_02174	0.20	-0.4
2,427,358	+		MIT1002_02174	0.21	-0.5
2,427,456	-		MIT1002_02174	0.24	-0.4
2,427,584	-		MIT1002_02174	0.28	-0.2
2,427,584	-		MIT1002_02174	0.28	-1.3
2,427,584	-		MIT1002_02174	0.28	+0.5
2,427,633	+		MIT1002_02174	0.30	-2.5
2,427,633	+		MIT1002_02174	0.30	+0.0
2,427,635	+		MIT1002_02174	0.30	-1.6
2,427,641	-		MIT1002_02174	0.30	-1.3
2,427,641	-		MIT1002_02174	0.30	+0.5
2,427,758	+		MIT1002_02174	0.34	-1.1
2,427,773	+		MIT1002_02174	0.35	-0.9
2,427,783	+		MIT1002_02174	0.35	+0.4
2,427,791	-		MIT1002_02174	0.36	-1.1
2,427,791	-		MIT1002_02174	0.36	+0.1
2,427,797	+		MIT1002_02174	0.36	-1.6
2,427,905	-		MIT1002_02174	0.39	+1.6
2,427,925	+		MIT1002_02174	0.40	+0.5
2,427,925	+		MIT1002_02174	0.40	-0.7
2,427,991	+		MIT1002_02174	0.42	-0.9
2,427,992	-		MIT1002_02174	0.42	+0.9
2,428,009	-		MIT1002_02174	0.43	-2.3
2,428,030	+		MIT1002_02174	0.44	+1.5
2,428,030	+		MIT1002_02174	0.44	-1.1
2,428,072	-		MIT1002_02174	0.45	+1.2
2,428,114	-		MIT1002_02174	0.47	+0.0
2,428,132	+		MIT1002_02174	0.47	-1.0
2,428,132	+		MIT1002_02174	0.47	+0.1
2,428,151	+		MIT1002_02174	0.48	-0.1
2,428,159	-		MIT1002_02174	0.48	+0.3
2,428,258	-		MIT1002_02174	0.52	+0.6
2,428,331	-		MIT1002_02174	0.54	+0.6
2,428,345	+		MIT1002_02174	0.55	-1.6
2,428,345	+		MIT1002_02174	0.55	+0.2
2,428,345	+		MIT1002_02174	0.55	-1.0
2,428,380	+		MIT1002_02174	0.56	-0.1
2,428,388	-		MIT1002_02174	0.56	-0.9
2,428,503	+		MIT1002_02174	0.60	-0.1
2,428,503	+		MIT1002_02174	0.60	-1.0
2,428,547	-		MIT1002_02174	0.62	+0.7
2,428,699	-		MIT1002_02174	0.67	+0.5
2,428,814	+		MIT1002_02174	0.71	-0.5
2,428,890	+		MIT1002_02174	0.73	-0.4
2,428,910	-		MIT1002_02174	0.74	-2.4
2,428,926	+		MIT1002_02174	0.75	+0.5
2,428,944	-		MIT1002_02174	0.75	+0.1
2,428,944	-		MIT1002_02174	0.75	-1.4
2,428,965	+		MIT1002_02174	0.76	-1.2
2,428,965	+		MIT1002_02174	0.76	-0.3
2,429,061	-		MIT1002_02174	0.79	-1.1
2,429,080	+		MIT1002_02174	0.80	-0.5
2,429,090	+		MIT1002_02174	0.80	+0.5
2,429,090	+		MIT1002_02174	0.80	+1.5
2,429,097	+		MIT1002_02174	0.80	-1.0
2,429,156	-		MIT1002_02174	0.82	-1.0
2,429,241	+		MIT1002_02174	0.85	-0.1
2,429,272	+		MIT1002_02174	0.86	-0.3
2,429,315	+		MIT1002_02174	0.88	+0.1
2,429,333	-		MIT1002_02174	0.89	-0.8
2,429,343	-		MIT1002_02174	0.89	-0.8
2,429,343	-		MIT1002_02174	0.89	+0.9
2,429,343	-		MIT1002_02174	0.89	-1.2
2,429,350	+		MIT1002_02174	0.89	+0.8
2,429,350	+		MIT1002_02174	0.89	-0.7
2,429,350	+		MIT1002_02174	0.89	+1.7
2,429,358	-		MIT1002_02174	0.89	+0.2
2,429,358	-		MIT1002_02174	0.89	+0.2
2,429,358	-		MIT1002_02174	0.89	+0.8
2,429,442	-				+0.1
2,429,495	+				-0.4
2,429,513	-				+1.1
2,429,596	-				+0.1
2,429,614	+				+1.1
2,429,614	+				-0.6
2,429,635	+				+1.8
2,429,664	+				+0.9
2,429,672	-				-1.4
2,429,815	+				+2.9
2,429,853	+				-0.2