Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02055

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,315,162	-		MIT1002_02054	0.75	-1.0
2,315,208	+		MIT1002_02054	0.77	-0.2
2,315,218	+		MIT1002_02054	0.77	-0.3
2,315,226	-		MIT1002_02054	0.77	+0.4
2,315,230	-		MIT1002_02054	0.77	+2.2
2,315,230	-		MIT1002_02054	0.77	-0.7
2,315,244	-		MIT1002_02054	0.78	-0.5
2,315,295	+		MIT1002_02054	0.79	-0.8
2,315,298	-		MIT1002_02054	0.80	-1.8
2,315,298	-		MIT1002_02054	0.80	+0.5
2,315,316	-		MIT1002_02054	0.80	+0.5
2,315,327	+		MIT1002_02054	0.81	-1.1
2,315,332	+		MIT1002_02054	0.81	+0.4
2,315,394	+		MIT1002_02054	0.83	-0.1
2,315,454	+		MIT1002_02054	0.84	+1.1
2,315,538	-		MIT1002_02054	0.87	-0.4
2,315,548	-		MIT1002_02054	0.87	+1.0
2,315,559	-		MIT1002_02054	0.88	-1.2
2,315,593	+		MIT1002_02054	0.89	+0.0
2,315,593	+		MIT1002_02054	0.89	+0.7
2,315,606	-		MIT1002_02054	0.89	+0.6
2,315,606	-		MIT1002_02054	0.89	-0.4
2,315,606	-		MIT1002_02054	0.89	-0.3
2,315,606	-		MIT1002_02054	0.89	+0.0
2,315,606	-		MIT1002_02054	0.89	+0.0
2,315,645	-				+0.1
2,315,652	+				-0.3
2,315,658	-				-2.0
2,315,660	+				-2.5
2,315,660	-				-0.9
2,315,660	-				-0.6
2,315,678	+				+0.9
2,315,702	+				+0.2
2,315,710	-				-0.3
2,315,755	+				-0.1
2,315,763	-				-2.0
2,315,786	-				-0.6
2,315,969	+				-2.9
2,315,977	-				+0.8
2,316,059	-				-0.3
2,316,078	-				+1.5
2,316,083	-				-0.1
2,316,157	-				-0.2
2,316,211	+				-0.6
2,316,219	-		MIT1002_02055	0.10	-1.8
2,316,226	+		MIT1002_02055	0.11	+0.2
2,316,287	-		MIT1002_02055	0.18	+1.1
2,316,289	+		MIT1002_02055	0.18	-1.3
2,316,289	+		MIT1002_02055	0.18	-1.4
2,316,289	+		MIT1002_02055	0.18	+0.3
2,316,289	+		MIT1002_02055	0.18	+0.7
2,316,297	-		MIT1002_02055	0.19	-1.0
2,316,297	-		MIT1002_02055	0.19	+0.9
2,316,297	-		MIT1002_02055	0.19	+0.1
2,316,297	-		MIT1002_02055	0.19	+3.4
2,316,297	-		MIT1002_02055	0.19	-0.3
2,316,301	+		MIT1002_02055	0.19	+0.2
2,316,399	-		MIT1002_02055	0.30	+0.6
2,316,419	+		MIT1002_02055	0.32	-0.5
2,316,615	+		MIT1002_02055	0.54	+1.3
2,316,623	-		MIT1002_02055	0.55	-0.5
2,316,627	+		MIT1002_02055	0.55	+0.5
2,316,645	-		MIT1002_02055	0.57	+1.1
2,316,682	-		MIT1002_02055	0.62	+3.7
2,316,687	-		MIT1002_02055	0.62	+0.3
2,316,726	+		MIT1002_02055	0.66	-0.7
2,316,749	+		MIT1002_02055	0.69	-0.5
2,316,749	-		MIT1002_02055	0.69	-0.0
2,316,749	-		MIT1002_02055	0.69	-0.5
2,316,749	-		MIT1002_02055	0.69	-0.4
2,316,757	-		MIT1002_02055	0.70	+1.1
2,316,806	+		MIT1002_02055	0.75	+0.6
2,316,849	+		MIT1002_02055	0.80	-0.7
2,316,854	+		MIT1002_02055	0.81	-0.9
2,316,854	+		MIT1002_02055	0.81	-1.4
2,316,854	+		MIT1002_02055	0.81	-0.6
2,316,862	-		MIT1002_02055	0.82	+0.9
2,316,911	-		MIT1002_02055	0.87	-0.3
2,316,930	+		MIT1002_02055	0.89	+0.2
2,317,029	+				-0.7
2,317,278	+		MIT1002_02056	0.24	+1.8
2,317,278	+		MIT1002_02056	0.24	+0.1
2,317,283	-		MIT1002_02056	0.25	-0.9
2,317,286	-		MIT1002_02056	0.25	+0.0
2,317,333	-		MIT1002_02056	0.30	-1.3
2,317,338	+		MIT1002_02056	0.31	-0.9
2,317,357	-		MIT1002_02056	0.33	+1.0
2,317,367	-		MIT1002_02056	0.34	-0.7
2,317,380	+		MIT1002_02056	0.36	+1.9
2,317,448	-		MIT1002_02056	0.43	-0.3
2,317,481	+		MIT1002_02056	0.47	-1.1
2,317,489	-		MIT1002_02056	0.48	+1.6
2,317,489	-		MIT1002_02056	0.48	+0.8
2,317,489	-		MIT1002_02056	0.48	+0.8
2,317,527	+		MIT1002_02056	0.52	+0.5
2,317,527	+		MIT1002_02056	0.52	-0.5
2,317,535	-		MIT1002_02056	0.53	+0.5
2,317,673	+		MIT1002_02056	0.69	-0.9
2,317,684	+		MIT1002_02056	0.70	+0.4
2,317,723	-		MIT1002_02056	0.74	-1.9
2,317,750	-		MIT1002_02056	0.77	-0.5
2,317,774	+		MIT1002_02056	0.80	+0.8
2,317,793	+		MIT1002_02056	0.82	+0.8
2,317,823	+		MIT1002_02056	0.86	+0.7
2,317,859	-		MIT1002_02056	0.90	-0.8
2,317,945	+				-0.3
2,317,950	-				+0.1
2,317,957	+				-2.4
2,317,965	-				-1.2
2,317,965	-				+0.1
2,317,969	+				-1.8
2,317,988	+				-0.7
2,317,988	+				+0.5
2,318,000	+				+0.5
2,318,000	+				-0.3
2,318,000	+				-0.2
2,318,000	+				+0.2
2,318,000	+				+0.2
2,318,000	+				+0.2
2,318,000	+				+0.6
2,318,000	+				+0.3
2,318,008	-				+0.3
2,318,008	-				-0.7
2,318,008	-				-1.5
2,318,008	-				+0.2