Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02028

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,269,583	+		MIT1002_02027	0.43	+1.8
2,269,583	+		MIT1002_02027	0.43	-2.5
2,269,583	+		MIT1002_02027	0.43	+0.5
2,269,591	-		MIT1002_02027	0.44	+0.3
2,269,609	+		MIT1002_02027	0.45	-1.3
2,269,609	+		MIT1002_02027	0.45	+0.1
2,269,609	+		MIT1002_02027	0.45	-2.6
2,269,609	+		MIT1002_02027	0.45	+3.0
2,269,800	+		MIT1002_02027	0.58	+1.1
2,269,849	+		MIT1002_02027	0.62	-0.3
2,269,898	+		MIT1002_02027	0.65	-0.1
2,269,900	-		MIT1002_02027	0.65	+0.5
2,270,035	-		MIT1002_02027	0.74	-1.2
2,270,111	-		MIT1002_02027	0.79	-1.1
2,270,169	+		MIT1002_02027	0.83	-0.3
2,270,196	+		MIT1002_02027	0.85	-1.5
2,270,196	+		MIT1002_02027	0.85	-1.6
2,270,196	+		MIT1002_02027	0.85	-1.4
2,270,204	-		MIT1002_02027	0.86	-0.5
2,270,204	-		MIT1002_02027	0.86	+0.4
2,270,244	+		MIT1002_02027	0.88	+0.8
2,270,255	+		MIT1002_02027	0.89	-0.5
2,270,411	+				-0.3
2,270,419	-				+0.6
2,270,431	-				-0.1
2,270,484	-				+0.9
2,270,529	+				+0.6
2,270,530	-				-0.6
2,270,532	+				-0.3
2,270,532	+				-0.2
2,270,540	-				-1.1
2,270,687	+				+0.2
2,270,710	-				-0.2
2,270,720	+				-0.4
2,270,774	-		MIT1002_02028	0.12	-0.8
2,270,776	+		MIT1002_02028	0.12	+1.2
2,270,818	-		MIT1002_02028	0.14	+0.8
2,270,834	+		MIT1002_02028	0.14	-0.8
2,270,888	-		MIT1002_02028	0.16	+0.7
2,270,888	-		MIT1002_02028	0.16	-0.9
2,270,888	-		MIT1002_02028	0.16	+0.1
2,270,888	-		MIT1002_02028	0.16	-1.5
2,270,909	+		MIT1002_02028	0.17	-0.8
2,270,959	-		MIT1002_02028	0.19	-0.2
2,271,067	+		MIT1002_02028	0.23	+0.4
2,271,175	+		MIT1002_02028	0.27	+0.7
2,271,185	+		MIT1002_02028	0.28	-0.3
2,271,190	+		MIT1002_02028	0.28	-1.2
2,271,244	-		MIT1002_02028	0.30	+0.1
2,271,447	+		MIT1002_02028	0.38	+1.6
2,271,447	+		MIT1002_02028	0.38	+1.2
2,271,455	-		MIT1002_02028	0.38	+0.6
2,271,455	-		MIT1002_02028	0.38	+1.5
2,271,492	+		MIT1002_02028	0.39	+0.5
2,271,582	+		MIT1002_02028	0.43	+0.2
2,271,638	+		MIT1002_02028	0.45	-1.4
2,271,650	-		MIT1002_02028	0.45	-1.3
2,271,657	+		MIT1002_02028	0.46	-0.3
2,271,681	+		MIT1002_02028	0.47	+2.5
2,271,710	+		MIT1002_02028	0.48	+0.9
2,271,718	-		MIT1002_02028	0.48	+3.0
2,271,808	+		MIT1002_02028	0.51	+1.3
2,271,818	+		MIT1002_02028	0.52	-0.9
2,271,826	-		MIT1002_02028	0.52	-0.5
2,271,826	-		MIT1002_02028	0.52	-0.2
2,271,826	-		MIT1002_02028	0.52	-0.4
2,271,852	-		MIT1002_02028	0.53	-0.6
2,271,852	-		MIT1002_02028	0.53	+0.3
2,271,854	+		MIT1002_02028	0.53	+0.5
2,271,862	-		MIT1002_02028	0.54	+1.2
2,271,862	-		MIT1002_02028	0.54	-0.8
2,271,862	-		MIT1002_02028	0.54	-0.8
2,271,884	+		MIT1002_02028	0.54	+0.7
2,271,910	+		MIT1002_02028	0.55	-0.1
2,271,956	+		MIT1002_02028	0.57	+0.9
2,271,962	-		MIT1002_02028	0.57	-0.5
2,272,062	-		MIT1002_02028	0.61	+0.5
2,272,134	-		MIT1002_02028	0.64	+2.0
2,272,151	-		MIT1002_02028	0.65	-0.1
2,272,198	-		MIT1002_02028	0.66	+0.9
2,272,198	-		MIT1002_02028	0.66	-0.8
2,272,217	+		MIT1002_02028	0.67	+0.0
2,272,217	+		MIT1002_02028	0.67	+1.3
2,272,225	-		MIT1002_02028	0.67	-0.9
2,272,255	-		MIT1002_02028	0.69	+0.3
2,272,258	+		MIT1002_02028	0.69	-0.8
2,272,270	+		MIT1002_02028	0.69	-0.7
2,272,278	-		MIT1002_02028	0.70	+1.7
2,272,354	-		MIT1002_02028	0.72	+1.0
2,272,522	+		MIT1002_02028	0.79	-0.1
2,272,530	-		MIT1002_02028	0.79	-0.6
2,272,604	+		MIT1002_02028	0.82	+1.2
2,272,611	+		MIT1002_02028	0.82	+0.3
2,272,614	+		MIT1002_02028	0.82	-1.0
2,272,622	-		MIT1002_02028	0.83	-1.0
2,272,622	-		MIT1002_02028	0.83	+0.5
2,272,627	+		MIT1002_02028	0.83	+0.6
2,272,846	+				-1.0
2,272,997	-				-1.0
2,273,075	-				+0.2
2,273,075	-				+1.3
2,273,172	+		MIT1002_02029	0.46	+0.6
2,273,180	-		MIT1002_02029	0.49	+0.4
2,273,232	+		MIT1002_02029	0.71	-0.6
2,273,291	-				-0.5
2,273,358	-				+1.4
2,273,361	-				-0.6
2,273,361	-				-0.5
2,273,393	-				-0.6
2,273,539	-				+0.1
2,273,589	+				-0.7
2,273,597	-				-2.0
2,273,609	-				-1.5
2,273,693	+				-0.4
2,273,693	+				+1.5
2,273,701	-				-1.4
2,273,826	+				+0.3
2,273,896	+		MIT1002_02030	0.13	-2.7
2,273,931	+		MIT1002_02030	0.14	-0.7
2,273,954	-		MIT1002_02030	0.15	+1.2
2,273,955	-		MIT1002_02030	0.15	+0.0
2,273,958	+		MIT1002_02030	0.16	+0.3
2,273,983	+		MIT1002_02030	0.17	-0.2