Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01921

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
2,127,958	+		MIT1002_01920	0.50	-1.2
2,127,975	+		MIT1002_01920	0.51	+0.8
2,127,989	+		MIT1002_01920	0.52	-1.1
2,128,058	+		MIT1002_01920	0.56	-1.2
2,128,160	+		MIT1002_01920	0.63	-3.2
2,128,160	+		MIT1002_01920	0.63	-1.3
2,128,168	-		MIT1002_01920	0.63	-2.7
2,128,191	-		MIT1002_01920	0.64	-2.1
2,128,217	-		MIT1002_01920	0.66	-1.0
2,128,276	+		MIT1002_01920	0.69	-2.3
2,128,276	+		MIT1002_01920	0.69	-0.2
2,128,276	+		MIT1002_01920	0.69	-0.4
2,128,284	-		MIT1002_01920	0.70	+1.5
2,128,284	-		MIT1002_01920	0.70	-2.5
2,128,297	-		MIT1002_01920	0.71	-0.7
2,128,355	-		MIT1002_01920	0.74	-1.6
2,128,355	-		MIT1002_01920	0.74	-0.4
2,128,388	+		MIT1002_01920	0.76	+1.2
2,128,537	+		MIT1002_01920	0.85	-0.4
2,128,744	+				+0.5
2,128,746	+				+0.1
2,128,845	+				-1.4
2,128,845	+				-0.2
2,128,845	+				+0.1
2,128,845	+				-0.1
2,128,950	-		MIT1002_01921	0.18	-0.6
2,129,005	-		MIT1002_01921	0.25	-1.1
2,129,156	-		MIT1002_01921	0.46	-0.5
2,129,252	+		MIT1002_01921	0.59	-1.1
2,129,265	+		MIT1002_01921	0.60	-3.2
2,129,273	-		MIT1002_01921	0.62	-0.6
2,129,293	-		MIT1002_01921	0.64	-0.2
2,129,325	+		MIT1002_01921	0.69	+3.3
2,129,347	+		MIT1002_01921	0.72	-1.1
2,129,375	-		MIT1002_01921	0.75	-2.3
2,129,375	-		MIT1002_01921	0.75	+1.0
2,129,489	-				+1.7
2,129,535	+				-0.4
2,129,535	+				-0.6
2,129,543	-				-0.4
2,129,549	+				-1.6
2,129,662	-				-1.9
2,129,794	+				-0.7
2,129,833	+				+1.4
2,129,841	-				-0.3
2,129,846	+				+0.0
2,129,912	+				-0.3
2,129,936	-				-2.7
2,129,937	-				-1.3
2,130,031	+				-0.4
2,130,039	-				+0.5
2,130,078	+				-0.3
2,130,161	-				+0.4
2,130,197	-		MIT1002_01922	0.11	-1.3
2,130,197	-		MIT1002_01922	0.11	+2.2
2,130,221	+		MIT1002_01922	0.11	-1.7
2,130,221	+		MIT1002_01922	0.11	-1.8
2,130,229	-		MIT1002_01922	0.12	-2.5
2,130,235	+		MIT1002_01922	0.12	-0.1
2,130,243	+		MIT1002_01922	0.12	-1.6
2,130,243	-		MIT1002_01922	0.12	-0.7
2,130,243	-		MIT1002_01922	0.12	-1.0
2,130,264	-		MIT1002_01922	0.13	-0.3
2,130,264	-		MIT1002_01922	0.13	-1.1
2,130,292	+		MIT1002_01922	0.13	+0.6
2,130,359	-		MIT1002_01922	0.15	-0.6
2,130,382	+		MIT1002_01922	0.16	-2.2
2,130,395	+		MIT1002_01922	0.16	+1.1