Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01472

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
1,628,318	+		MIT1002_01470	0.29	+0.8
1,628,325	+		MIT1002_01470	0.31	-1.9
1,628,326	-		MIT1002_01470	0.31	+1.1
1,628,346	-		MIT1002_01470	0.35	+2.4
1,628,354	-		MIT1002_01470	0.36	-0.1
1,628,364	-		MIT1002_01470	0.38	-0.3
1,628,379	-		MIT1002_01470	0.41	-2.3
1,628,387	-		MIT1002_01470	0.42	-1.9
1,628,389	+		MIT1002_01470	0.43	-1.2
1,628,403	-		MIT1002_01470	0.45	+0.1
1,628,550	-		MIT1002_01470	0.72	-1.6
1,628,599	-		MIT1002_01470	0.81	-0.1
1,628,601	+		MIT1002_01470	0.82	-1.6
1,628,609	-		MIT1002_01470	0.83	+0.1
1,628,609	-		MIT1002_01470	0.83	-1.1
1,628,609	-		MIT1002_01470	0.83	+0.7
1,628,609	-		MIT1002_01470	0.83	-0.5
1,628,655	+				-2.2
1,628,664	-				+0.7
1,628,668	+				-0.3
1,628,668	+				+0.1
1,628,714	-				+0.4
1,628,763	-				+0.8
1,628,878	+		MIT1002_01471	0.22	-1.2
1,628,888	+		MIT1002_01471	0.25	+1.1
1,628,888	+		MIT1002_01471	0.25	+0.1
1,628,954	-		MIT1002_01471	0.42	-0.5
1,629,001	+		MIT1002_01471	0.54	+1.3
1,629,083	+		MIT1002_01471	0.75	-0.7
1,629,083	-		MIT1002_01471	0.75	-1.3
1,629,083	-		MIT1002_01471	0.75	+0.2
1,629,133	-		MIT1002_01471	0.87	-0.5
1,629,348	-		MIT1002_01472	0.14	+0.7
1,629,363	+		MIT1002_01472	0.17	+0.1
1,629,445	+		MIT1002_01472	0.36	-2.6
1,629,473	-		MIT1002_01472	0.42	+3.0
1,629,591	+		MIT1002_01472	0.68	-2.1
1,629,616	+		MIT1002_01472	0.74	+0.6
1,629,705	+				-0.5
1,629,744	-				-1.4
1,629,751	-				-1.1
1,629,846	+				+0.9
1,629,854	-				-0.2
1,629,854	-				-0.4
1,630,010	-				+0.6
1,630,193	+				-0.3
1,630,201	+				+0.2
1,630,209	-				-0.7
1,630,211	+				+2.8
1,630,219	-				+0.9
1,630,219	-				+0.8
1,630,219	-				+1.7
1,630,232	+				+2.3
1,630,313	-		MIT1002_01473	0.16	+0.7
1,630,354	+		MIT1002_01473	0.19	+0.4
1,630,363	-		MIT1002_01473	0.20	-0.1
1,630,375	+		MIT1002_01473	0.21	-0.3
1,630,394	-		MIT1002_01473	0.23	+1.6
1,630,517	+		MIT1002_01473	0.33	+0.0
1,630,522	+		MIT1002_01473	0.34	+1.9
1,630,522	+		MIT1002_01473	0.34	+0.2
1,630,522	+		MIT1002_01473	0.34	+0.6
1,630,522	+		MIT1002_01473	0.34	+1.3
1,630,540	-		MIT1002_01473	0.35	+1.0
1,630,627	+		MIT1002_01473	0.42	+2.1
1,630,635	-		MIT1002_01473	0.43	+1.5
1,630,635	-		MIT1002_01473	0.43	+0.3
1,630,635	-		MIT1002_01473	0.43	+1.2
1,630,671	-		MIT1002_01473	0.46	+1.6
1,630,726	+		MIT1002_01473	0.51	-2.3