Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01234

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
1,358,632	-		MIT1002_01233	0.61	-1.9
1,358,759	+		MIT1002_01233	0.68	-0.0
1,358,765	+		MIT1002_01233	0.68	-1.6
1,358,791	-		MIT1002_01233	0.70	-1.0
1,358,798	+		MIT1002_01233	0.70	+0.0
1,358,798	+		MIT1002_01233	0.70	-0.1
1,358,798	+		MIT1002_01233	0.70	-0.9
1,358,798	+		MIT1002_01233	0.70	-1.2
1,358,798	+		MIT1002_01233	0.70	+0.3
1,358,798	+		MIT1002_01233	0.70	+0.5
1,358,806	-		MIT1002_01233	0.71	-0.1
1,358,806	-		MIT1002_01233	0.71	+1.8
1,358,806	-		MIT1002_01233	0.71	-0.2
1,358,808	+		MIT1002_01233	0.71	-0.3
1,358,808	+		MIT1002_01233	0.71	-1.1
1,358,816	-		MIT1002_01233	0.71	+0.1
1,358,816	-		MIT1002_01233	0.71	-1.9
1,358,816	-		MIT1002_01233	0.71	-1.2
1,358,895	-		MIT1002_01233	0.75	+1.1
1,358,895	-		MIT1002_01233	0.75	-1.4
1,358,947	+		MIT1002_01233	0.78	+0.6
1,358,981	+		MIT1002_01233	0.80	-0.2
1,359,036	+		MIT1002_01233	0.82	-0.7
1,359,044	-		MIT1002_01233	0.83	+1.5
1,359,044	-		MIT1002_01233	0.83	+1.7
1,359,072	+		MIT1002_01233	0.84	-0.3
1,359,114	+		MIT1002_01233	0.87	+1.4
1,359,122	-		MIT1002_01233	0.87	-0.6
1,359,231	+				-0.2
1,359,306	+				-0.3
1,359,511	+				+1.7
1,359,574	+				+0.4
1,359,574	-				-0.5
1,359,584	-				-0.5
1,359,584	-				-0.0
1,359,608	-				+0.5
1,360,284	-				-0.9
1,360,296	-				-0.2
1,360,436	+				-0.5
1,360,454	-				-0.3
1,360,480	-				-1.3
1,360,629	+		MIT1002_01235	0.24	-2.0
1,360,632	-		MIT1002_01235	0.25	-1.8
1,360,637	-		MIT1002_01235	0.26	-1.8
1,360,670	+		MIT1002_01235	0.36	-0.8
1,360,674	+		MIT1002_01235	0.37	+0.1
1,360,783	+		MIT1002_01235	0.68	-1.7
1,360,876	+				+0.7
1,360,897	-				-0.1
1,360,897	-				+0.8
1,361,136	+				+0.0
1,361,144	-				+1.7