Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01155

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01154 and MIT1002_01155 are separated by 291 nucleotidesMIT1002_01155 and MIT1002_01156 are separated by 43 nucleotides MIT1002_01154: MIT1002_01154 - Tryptophan 2,3-dioxygenase, at 1,265,085 to 1,266,173 _01154 MIT1002_01155: MIT1002_01155 - Outer membrane receptor for ferrienterochelin and colicins, at 1,266,465 to 1,269,413 _01155 MIT1002_01156: MIT1002_01156 - putative PEP-CTERM system TPR-repeat lipoprotein, at 1,269,457 to 1,270,938 _01156 Position (kb) 1266 1267 1268 1269 1270Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 1265.527 kb on + strand, within MIT1002_01154at 1265.541 kb on + strand, within MIT1002_01154at 1265.546 kb on + strand, within MIT1002_01154at 1265.734 kb on - strand, within MIT1002_01154at 1265.788 kb on - strand, within MIT1002_01154at 1265.824 kb on - strand, within MIT1002_01154at 1265.858 kb on + strand, within MIT1002_01154at 1265.877 kb on + strand, within MIT1002_01154at 1265.879 kb on + strand, within MIT1002_01154at 1265.884 kb on + strand, within MIT1002_01154at 1265.892 kb on - strand, within MIT1002_01154at 1265.892 kb on - strand, within MIT1002_01154at 1265.941 kb on - strand, within MIT1002_01154at 1266.049 kb on + strand, within MIT1002_01154at 1266.105 kb on - strandat 1266.417 kb on + strandat 1266.542 kb on + strandat 1266.542 kb on + strandat 1266.549 kb on - strandat 1266.585 kb on + strandat 1266.585 kb on + strandat 1266.633 kb on + strandat 1266.757 kb on + strandat 1266.868 kb on + strand, within MIT1002_01155at 1266.875 kb on + strand, within MIT1002_01155at 1266.875 kb on + strand, within MIT1002_01155at 1266.875 kb on + strand, within MIT1002_01155at 1266.875 kb on + strand, within MIT1002_01155at 1266.881 kb on - strand, within MIT1002_01155at 1266.883 kb on - strand, within MIT1002_01155at 1266.883 kb on - strand, within MIT1002_01155at 1266.883 kb on - strand, within MIT1002_01155at 1266.990 kb on - strand, within MIT1002_01155at 1267.000 kb on + strand, within MIT1002_01155at 1267.036 kb on + strand, within MIT1002_01155at 1267.044 kb on - strand, within MIT1002_01155at 1267.044 kb on - strand, within MIT1002_01155at 1267.180 kb on - strand, within MIT1002_01155at 1267.232 kb on + strand, within MIT1002_01155at 1267.240 kb on - strand, within MIT1002_01155at 1267.250 kb on - strand, within MIT1002_01155at 1267.275 kb on - strand, within MIT1002_01155at 1267.294 kb on - strand, within MIT1002_01155at 1267.294 kb on - strand, within MIT1002_01155at 1267.304 kb on - strand, within MIT1002_01155at 1267.304 kb on - strand, within MIT1002_01155at 1267.354 kb on - strand, within MIT1002_01155at 1267.354 kb on - strand, within MIT1002_01155at 1267.427 kb on + strand, within MIT1002_01155at 1267.441 kb on - strand, within MIT1002_01155at 1267.443 kb on - strand, within MIT1002_01155at 1267.458 kb on + strand, within MIT1002_01155at 1267.466 kb on - strand, within MIT1002_01155at 1267.475 kb on - strand, within MIT1002_01155at 1267.475 kb on - strand, within MIT1002_01155at 1267.477 kb on + strand, within MIT1002_01155at 1267.477 kb on + strand, within MIT1002_01155at 1267.485 kb on - strand, within MIT1002_01155at 1267.501 kb on + strand, within MIT1002_01155at 1267.532 kb on + strand, within MIT1002_01155at 1267.532 kb on + strand, within MIT1002_01155at 1267.532 kb on + strand, within MIT1002_01155at 1267.540 kb on - strand, within MIT1002_01155at 1267.540 kb on - strand, within MIT1002_01155at 1267.540 kb on - strand, within MIT1002_01155at 1267.568 kb on + strand, within MIT1002_01155at 1267.571 kb on - strand, within MIT1002_01155at 1267.613 kb on - strand, within MIT1002_01155at 1267.634 kb on + strand, within MIT1002_01155at 1267.644 kb on + strand, within MIT1002_01155at 1267.652 kb on - strand, within MIT1002_01155at 1267.656 kb on + strand, within MIT1002_01155at 1267.672 kb on + strand, within MIT1002_01155at 1267.686 kb on + strand, within MIT1002_01155at 1267.793 kb on - strand, within MIT1002_01155at 1267.801 kb on + strand, within MIT1002_01155at 1267.835 kb on - strand, within MIT1002_01155at 1267.857 kb on + strand, within MIT1002_01155at 1267.865 kb on + strand, within MIT1002_01155at 1267.865 kb on + strand, within MIT1002_01155at 1267.939 kb on + strand, within MIT1002_01155at 1267.991 kb on + strand, within MIT1002_01155at 1267.994 kb on - strand, within MIT1002_01155at 1268.021 kb on + strand, within MIT1002_01155at 1268.086 kb on + strand, within MIT1002_01155at 1268.096 kb on - strand, within MIT1002_01155at 1268.104 kb on - strand, within MIT1002_01155at 1268.185 kb on + strand, within MIT1002_01155at 1268.199 kb on + strand, within MIT1002_01155at 1268.199 kb on + strand, within MIT1002_01155at 1268.202 kb on - strand, within MIT1002_01155at 1268.247 kb on + strand, within MIT1002_01155at 1268.364 kb on + strand, within MIT1002_01155at 1268.387 kb on - strand, within MIT1002_01155at 1268.394 kb on + strand, within MIT1002_01155at 1268.394 kb on - strand, within MIT1002_01155at 1268.419 kb on - strand, within MIT1002_01155at 1268.422 kb on + strand, within MIT1002_01155at 1268.472 kb on + strand, within MIT1002_01155at 1268.525 kb on + strand, within MIT1002_01155at 1268.582 kb on + strand, within MIT1002_01155at 1268.592 kb on + strand, within MIT1002_01155at 1268.616 kb on + strand, within MIT1002_01155at 1268.617 kb on - strand, within MIT1002_01155at 1268.623 kb on + strand, within MIT1002_01155at 1268.698 kb on + strand, within MIT1002_01155at 1268.706 kb on - strand, within MIT1002_01155at 1268.747 kb on + strand, within MIT1002_01155at 1268.768 kb on - strand, within MIT1002_01155at 1268.857 kb on - strand, within MIT1002_01155at 1268.857 kb on - strand, within MIT1002_01155at 1268.862 kb on - strand, within MIT1002_01155at 1268.863 kb on - strand, within MIT1002_01155at 1269.018 kb on - strand, within MIT1002_01155at 1269.018 kb on - strand, within MIT1002_01155at 1269.095 kb on + strand, within MIT1002_01155at 1269.145 kb on + strandat 1269.154 kb on + strandat 1269.162 kb on - strandat 1269.166 kb on + strandat 1269.241 kb on + strandat 1269.241 kb on + strandat 1269.241 kb on + strandat 1269.265 kb on + strandat 1269.276 kb on - strandat 1269.298 kb on + strandat 1269.298 kb on + strandat 1269.303 kb on + strandat 1269.319 kb on + strandat 1269.353 kb on - strandat 1269.356 kb on + strandat 1269.356 kb on + strandat 1269.364 kb on - strandat 1269.364 kb on - strandat 1269.364 kb on - strandat 1269.426 kb on + strandat 1269.426 kb on + strandat 1269.431 kb on + strandat 1269.444 kb on - strandat 1269.444 kb on - strandat 1269.444 kb on - strandat 1269.570 kb on + strandat 1269.578 kb on - strandat 1269.578 kb on - strandat 1269.613 kb on - strand, within MIT1002_01156at 1269.613 kb on - strand, within MIT1002_01156at 1269.744 kb on - strand, within MIT1002_01156at 1269.756 kb on - strand, within MIT1002_01156at 1269.766 kb on + strand, within MIT1002_01156at 1269.774 kb on - strand, within MIT1002_01156at 1269.801 kb on + strand, within MIT1002_01156at 1269.823 kb on - strand, within MIT1002_01156at 1269.901 kb on - strand, within MIT1002_01156at 1269.905 kb on + strand, within MIT1002_01156at 1269.933 kb on - strand, within MIT1002_01156at 1269.935 kb on + strand, within MIT1002_01156at 1269.959 kb on - strand, within MIT1002_01156at 1269.972 kb on + strand, within MIT1002_01156at 1269.980 kb on - strand, within MIT1002_01156at 1270.007 kb on - strand, within MIT1002_01156at 1270.042 kb on - strand, within MIT1002_01156at 1270.109 kb on + strand, within MIT1002_01156at 1270.131 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.152 kb on + strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.160 kb on - strand, within MIT1002_01156at 1270.265 kb on + strand, within MIT1002_01156at 1270.265 kb on + strand, within MIT1002_01156at 1270.288 kb on - strand, within MIT1002_01156at 1270.309 kb on + strand, within MIT1002_01156at 1270.386 kb on + strand, within MIT1002_01156

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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1,265,527 + MIT1002_01154 0.41 -1.2
1,265,541 + MIT1002_01154 0.42 +1.5
1,265,546 + MIT1002_01154 0.42 -0.3
1,265,734 - MIT1002_01154 0.60 +1.6
1,265,788 - MIT1002_01154 0.65 -1.2
1,265,824 - MIT1002_01154 0.68 +0.1
1,265,858 + MIT1002_01154 0.71 -1.8
1,265,877 + MIT1002_01154 0.73 +0.5
1,265,879 + MIT1002_01154 0.73 -0.8
1,265,884 + MIT1002_01154 0.73 -0.9
1,265,892 - MIT1002_01154 0.74 -1.2
1,265,892 - MIT1002_01154 0.74 +0.5
1,265,941 - MIT1002_01154 0.79 -1.1
1,266,049 + MIT1002_01154 0.89 +0.3
1,266,105 - -2.2
1,266,417 + -0.4
1,266,542 + +0.6
1,266,542 + -0.5
1,266,549 - -1.2
1,266,585 + +0.3
1,266,585 + -1.3
1,266,633 + +1.0
1,266,757 + +1.6
1,266,868 + MIT1002_01155 0.14 -2.0
1,266,875 + MIT1002_01155 0.14 +0.1
1,266,875 + MIT1002_01155 0.14 +2.1
1,266,875 + MIT1002_01155 0.14 -1.5
1,266,875 + MIT1002_01155 0.14 +0.5
1,266,881 - MIT1002_01155 0.14 +0.1
1,266,883 - MIT1002_01155 0.14 +0.4
1,266,883 - MIT1002_01155 0.14 +0.2
1,266,883 - MIT1002_01155 0.14 +0.1
1,266,990 - MIT1002_01155 0.18 +1.3
1,267,000 + MIT1002_01155 0.18 +0.0
1,267,036 + MIT1002_01155 0.19 -0.2
1,267,044 - MIT1002_01155 0.20 +0.2
1,267,044 - MIT1002_01155 0.20 -0.1
1,267,180 - MIT1002_01155 0.24 +0.1
1,267,232 + MIT1002_01155 0.26 +1.0
1,267,240 - MIT1002_01155 0.26 -0.5
1,267,250 - MIT1002_01155 0.27 +2.1
1,267,275 - MIT1002_01155 0.27 -0.7
1,267,294 - MIT1002_01155 0.28 +0.8
1,267,294 - MIT1002_01155 0.28 +0.5
1,267,304 - MIT1002_01155 0.28 +1.0
1,267,304 - MIT1002_01155 0.28 -0.7
1,267,354 - MIT1002_01155 0.30 +0.4
1,267,354 - MIT1002_01155 0.30 -1.0
1,267,427 + MIT1002_01155 0.33 +1.7
1,267,441 - MIT1002_01155 0.33 +1.2
1,267,443 - MIT1002_01155 0.33 +1.5
1,267,458 + MIT1002_01155 0.34 +1.5
1,267,466 - MIT1002_01155 0.34 +0.8
1,267,475 - MIT1002_01155 0.34 +0.5
1,267,475 - MIT1002_01155 0.34 +1.3
1,267,477 + MIT1002_01155 0.34 -1.7
1,267,477 + MIT1002_01155 0.34 +1.3
1,267,485 - MIT1002_01155 0.35 -1.0
1,267,501 + MIT1002_01155 0.35 +4.0
1,267,532 + MIT1002_01155 0.36 +1.3
1,267,532 + MIT1002_01155 0.36 -0.2
1,267,532 + MIT1002_01155 0.36 +0.6
1,267,540 - MIT1002_01155 0.36 -0.3
1,267,540 - MIT1002_01155 0.36 -0.3
1,267,540 - MIT1002_01155 0.36 -0.2
1,267,568 + MIT1002_01155 0.37 +0.7
1,267,571 - MIT1002_01155 0.38 +1.9
1,267,613 - MIT1002_01155 0.39 +1.1
1,267,634 + MIT1002_01155 0.40 -0.7
1,267,644 + MIT1002_01155 0.40 +0.4
1,267,652 - MIT1002_01155 0.40 -0.7
1,267,656 + MIT1002_01155 0.40 +0.7
1,267,672 + MIT1002_01155 0.41 +0.6
1,267,686 + MIT1002_01155 0.41 -0.7
1,267,793 - MIT1002_01155 0.45 +1.0
1,267,801 + MIT1002_01155 0.45 +0.4
1,267,835 - MIT1002_01155 0.46 -0.5
1,267,857 + MIT1002_01155 0.47 +10.9
1,267,865 + MIT1002_01155 0.47 -0.4
1,267,865 + MIT1002_01155 0.47 -0.7
1,267,939 + MIT1002_01155 0.50 +0.7
1,267,991 + MIT1002_01155 0.52 -0.5
1,267,994 - MIT1002_01155 0.52 -2.1
1,268,021 + MIT1002_01155 0.53 -0.7
1,268,086 + MIT1002_01155 0.55 -0.6
1,268,096 - MIT1002_01155 0.55 +0.5
1,268,104 - MIT1002_01155 0.56 -0.5
1,268,185 + MIT1002_01155 0.58 -0.1
1,268,199 + MIT1002_01155 0.59 -0.5
1,268,199 + MIT1002_01155 0.59 -0.8
1,268,202 - MIT1002_01155 0.59 -2.6
1,268,247 + MIT1002_01155 0.60 +1.5
1,268,364 + MIT1002_01155 0.64 +1.3
1,268,387 - MIT1002_01155 0.65 -0.6
1,268,394 + MIT1002_01155 0.65 +2.0
1,268,394 - MIT1002_01155 0.65 +0.3
1,268,419 - MIT1002_01155 0.66 +0.1
1,268,422 + MIT1002_01155 0.66 -0.6
1,268,472 + MIT1002_01155 0.68 +0.7
1,268,525 + MIT1002_01155 0.70 -1.1
1,268,582 + MIT1002_01155 0.72 -1.5
1,268,592 + MIT1002_01155 0.72 -0.9
1,268,616 + MIT1002_01155 0.73 -0.9
1,268,617 - MIT1002_01155 0.73 +0.4
1,268,623 + MIT1002_01155 0.73 -0.4
1,268,698 + MIT1002_01155 0.76 +0.2
1,268,706 - MIT1002_01155 0.76 -0.7
1,268,747 + MIT1002_01155 0.77 +0.9
1,268,768 - MIT1002_01155 0.78 -0.0
1,268,857 - MIT1002_01155 0.81 +2.3
1,268,857 - MIT1002_01155 0.81 +0.5
1,268,862 - MIT1002_01155 0.81 +0.2
1,268,863 - MIT1002_01155 0.81 -1.1
1,269,018 - MIT1002_01155 0.87 -0.6
1,269,018 - MIT1002_01155 0.87 +0.1
1,269,095 + MIT1002_01155 0.89 +0.5
1,269,145 + +0.7
1,269,154 + -0.5
1,269,162 - -0.5
1,269,166 + -1.5
1,269,241 + +0.3
1,269,241 + -0.3
1,269,241 + +0.7
1,269,265 + -0.7
1,269,276 - -0.8
1,269,298 + -1.8
1,269,298 + +0.8
1,269,303 + +0.7
1,269,319 + -0.4
1,269,353 - -1.7
1,269,356 + +0.7
1,269,356 + -0.6
1,269,364 - -0.3
1,269,364 - -0.6
1,269,364 - +0.8
1,269,426 + +1.0
1,269,426 + -1.0
1,269,431 + -0.5
1,269,444 - -0.2
1,269,444 - +1.5
1,269,444 - -0.0
1,269,570 + +0.6
1,269,578 - +0.4
1,269,578 - -0.1
1,269,613 - MIT1002_01156 0.11 +0.3
1,269,613 - MIT1002_01156 0.11 +0.0
1,269,744 - MIT1002_01156 0.19 -0.3
1,269,756 - MIT1002_01156 0.20 +1.1
1,269,766 + MIT1002_01156 0.21 -1.4
1,269,774 - MIT1002_01156 0.21 -1.0
1,269,801 + MIT1002_01156 0.23 +0.6
1,269,823 - MIT1002_01156 0.25 +0.7
1,269,901 - MIT1002_01156 0.30 -0.4
1,269,905 + MIT1002_01156 0.30 +1.9
1,269,933 - MIT1002_01156 0.32 +0.3
1,269,935 + MIT1002_01156 0.32 -0.7
1,269,959 - MIT1002_01156 0.34 +0.7
1,269,972 + MIT1002_01156 0.35 -2.0
1,269,980 - MIT1002_01156 0.35 +1.2
1,270,007 - MIT1002_01156 0.37 -0.8
1,270,042 - MIT1002_01156 0.39 -0.8
1,270,109 + MIT1002_01156 0.44 +1.4
1,270,131 + MIT1002_01156 0.45 +0.0
1,270,152 + MIT1002_01156 0.47 -0.8
1,270,152 + MIT1002_01156 0.47 +1.9
1,270,152 + MIT1002_01156 0.47 -0.9
1,270,152 + MIT1002_01156 0.47 +0.4
1,270,152 + MIT1002_01156 0.47 -1.3
1,270,152 + MIT1002_01156 0.47 -0.3
1,270,152 + MIT1002_01156 0.47 +1.0
1,270,160 - MIT1002_01156 0.47 +0.3
1,270,160 - MIT1002_01156 0.47 +0.8
1,270,160 - MIT1002_01156 0.47 +0.5
1,270,160 - MIT1002_01156 0.47 -0.6
1,270,160 - MIT1002_01156 0.47 -0.2
1,270,160 - MIT1002_01156 0.47 -0.1
1,270,265 + MIT1002_01156 0.55 -0.1
1,270,265 + MIT1002_01156 0.55 +2.7
1,270,288 - MIT1002_01156 0.56 -0.3
1,270,309 + MIT1002_01156 0.57 +0.6
1,270,386 + MIT1002_01156 0.63 +0.9

Or see this region's nucleotide sequence