Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01059

Experiment: monoculture; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 3
1,168,057	-				-0.1
1,168,057	-				+0.1
1,168,089	+		MIT1002_01057	0.10	+0.4
1,168,116	-		MIT1002_01057	0.17	-0.5
1,168,127	-		MIT1002_01057	0.19	+0.3
1,168,149	-		MIT1002_01057	0.24	-0.1
1,168,243	+		MIT1002_01057	0.46	+0.9
1,168,431	+				+1.5
1,168,456	-				-0.4
1,168,456	-				-1.8
1,168,518	+		MIT1002_01058	0.18	-2.3
1,168,518	+		MIT1002_01058	0.18	-0.7
1,168,528	-		MIT1002_01058	0.21	-0.2
1,168,551	+		MIT1002_01058	0.29	-0.5
1,168,569	-		MIT1002_01058	0.35	-1.5
1,168,585	+		MIT1002_01058	0.40	-0.3
1,168,608	-		MIT1002_01058	0.48	+0.8
1,168,613	-		MIT1002_01058	0.50	-0.6
1,168,646	-		MIT1002_01058	0.61	+1.5
1,168,663	+		MIT1002_01058	0.67	-0.9
1,168,663	+		MIT1002_01058	0.67	-1.1
1,168,663	+		MIT1002_01058	0.67	-1.1
1,168,669	-		MIT1002_01058	0.69	+0.5
1,168,669	-		MIT1002_01058	0.69	+1.7
1,168,673	+		MIT1002_01058	0.70	+0.1
1,168,678	+		MIT1002_01058	0.72	+0.5
1,168,678	+		MIT1002_01058	0.72	-0.3
1,168,681	-		MIT1002_01058	0.73	-0.1
1,168,686	-		MIT1002_01058	0.74	+0.3
1,168,743	-				+0.1
1,168,795	+				-1.8
1,168,806	+				-0.1
1,168,806	+				-1.5
1,168,806	+				+1.0
1,168,806	+				-1.3
1,168,806	+				+0.6
1,168,814	-				+0.7
1,168,815	-				+0.3
1,168,887	-				-1.5
1,168,887	-				-1.0
1,168,895	+				+0.4
1,168,911	-				-3.5
1,168,945	+				+1.0
1,169,179	-		MIT1002_01059	0.10	-0.6
1,169,187	-		MIT1002_01059	0.10	+0.2
1,169,208	-		MIT1002_01059	0.11	+0.6
1,169,229	+		MIT1002_01059	0.12	+0.3
1,169,280	+		MIT1002_01059	0.15	+1.6
1,169,288	-		MIT1002_01059	0.15	+1.7
1,169,288	-		MIT1002_01059	0.15	-1.2
1,169,320	-		MIT1002_01059	0.17	-1.9
1,169,391	+		MIT1002_01059	0.20	-0.4
1,169,403	-		MIT1002_01059	0.21	-1.1
1,169,418	-		MIT1002_01059	0.21	-0.5
1,169,428	-		MIT1002_01059	0.22	+0.6
1,169,471	+		MIT1002_01059	0.24	-0.9
1,169,473	+		MIT1002_01059	0.24	-1.6
1,169,479	-		MIT1002_01059	0.24	-1.4
1,169,499	-		MIT1002_01059	0.25	-0.4
1,169,546	+		MIT1002_01059	0.27	+2.0
1,169,596	-		MIT1002_01059	0.30	+1.1
1,169,786	+		MIT1002_01059	0.39	-0.3
1,169,816	+		MIT1002_01059	0.40	-2.0
1,169,901	-		MIT1002_01059	0.44	+1.5
1,169,995	-		MIT1002_01059	0.49	+0.3
1,170,054	-		MIT1002_01059	0.51	-0.2
1,170,063	-		MIT1002_01059	0.52	-0.7
1,170,081	+		MIT1002_01059	0.53	-0.5
1,170,081	+		MIT1002_01059	0.53	-0.0
1,170,134	+		MIT1002_01059	0.55	-0.1
1,170,141	+		MIT1002_01059	0.56	+0.4
1,170,163	-		MIT1002_01059	0.57	+2.6
1,170,217	+		MIT1002_01059	0.59	-1.3
1,170,260	+		MIT1002_01059	0.61	+0.8
1,170,338	+		MIT1002_01059	0.65	+1.0
1,170,354	-		MIT1002_01059	0.66	-0.0
1,170,356	-		MIT1002_01059	0.66	+2.7
1,170,385	+		MIT1002_01059	0.67	+0.2
1,170,388	+		MIT1002_01059	0.67	-0.2
1,170,434	+		MIT1002_01059	0.69	-1.2
1,170,494	+		MIT1002_01059	0.72	+0.3
1,170,502	-		MIT1002_01059	0.73	+0.4
1,170,506	-		MIT1002_01059	0.73	-1.0
1,170,702	+		MIT1002_01059	0.82	+0.6
1,170,711	+		MIT1002_01059	0.82	+1.1
1,170,711	+		MIT1002_01059	0.82	+0.5
1,170,711	+		MIT1002_01059	0.82	-0.1
1,170,719	-		MIT1002_01059	0.83	+0.5
1,170,719	-		MIT1002_01059	0.83	-0.6
1,170,719	-		MIT1002_01059	0.83	+0.8
1,170,719	-		MIT1002_01059	0.83	-0.1
1,170,729	-		MIT1002_01059	0.83	+0.2
1,170,748	-		MIT1002_01059	0.84	+1.2
1,170,763	+		MIT1002_01059	0.85	+0.6
1,170,771	-		MIT1002_01059	0.85	+0.2
1,170,796	+		MIT1002_01059	0.86	-3.6
1,170,807	+		MIT1002_01059	0.87	-1.6
1,170,812	+		MIT1002_01059	0.87	+0.1
1,170,870	+				-2.4
1,170,870	+				-1.5
1,170,907	+				+0.0
1,170,963	-				+0.3
1,170,984	-				+0.1
1,171,023	-				-3.1
1,171,070	+				+0.7
1,171,079	-				-0.8
1,171,080	+				-0.5
1,171,276	-				+0.3
1,171,365	-		MIT1002_01060	0.14	-0.8
1,171,365	-		MIT1002_01060	0.14	-0.8
1,171,365	-		MIT1002_01060	0.14	-2.4
1,171,439	+		MIT1002_01060	0.20	-1.7
1,171,467	+		MIT1002_01060	0.23	+0.1
1,171,480	+		MIT1002_01060	0.24	-0.9
1,171,485	+		MIT1002_01060	0.24	-1.7
1,171,485	+		MIT1002_01060	0.24	+0.6
1,171,494	+		MIT1002_01060	0.25	-0.1
1,171,521	+		MIT1002_01060	0.28	+1.0
1,171,572	-		MIT1002_01060	0.32	-0.7
1,171,583	-		MIT1002_01060	0.33	-0.9
1,171,641	-		MIT1002_01060	0.38	-0.5
1,171,641	-		MIT1002_01060	0.38	-0.2
1,171,652	+		MIT1002_01060	0.39	+0.7
1,171,657	+		MIT1002_01060	0.40	-0.5
1,171,657	+		MIT1002_01060	0.40	+1.2
1,171,660	-		MIT1002_01060	0.40	+0.8
1,171,660	-		MIT1002_01060	0.40	+0.0
1,171,660	-		MIT1002_01060	0.40	-1.0
1,171,665	-		MIT1002_01060	0.40	-0.8
1,171,665	-		MIT1002_01060	0.40	+0.6
1,171,763	-		MIT1002_01060	0.49	-0.1
1,171,765	-		MIT1002_01060	0.49	+1.5
1,171,803	+		MIT1002_01060	0.52	-0.7
1,171,811	-		MIT1002_01060	0.53	+1.4
1,171,977	+		MIT1002_01060	0.68	-0.2
1,171,977	+		MIT1002_01060	0.68	+0.3
1,171,977	+		MIT1002_01060	0.68	-0.9
1,171,977	+		MIT1002_01060	0.68	-2.2
1,171,977	+		MIT1002_01060	0.68	+0.6
1,171,978	-		MIT1002_01060	0.68	-2.7
1,171,978	-		MIT1002_01060	0.68	-0.5
1,171,985	-		MIT1002_01060	0.68	-1.0
1,171,985	-		MIT1002_01060	0.68	-1.5
1,171,985	-		MIT1002_01060	0.68	+0.1