Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00890 and MIT1002_00891 are separated by 320 nucleotides MIT1002_00891 and MIT1002_00892 are separated by 93 nucleotides MIT1002_00892 and MIT1002_00893 are separated by 375 nucleotides
MIT1002_00890: MIT1002_00890 - Aminopeptidase N, at 979,775 to 981,706
_00890
MIT1002_00891: MIT1002_00891 - peroxiredoxin, at 982,027 to 982,563
_00891
MIT1002_00892: MIT1002_00892 - Transposase IS116/IS110/IS902 family protein, at 982,657 to 983,682
_00892
MIT1002_00893: MIT1002_00893 - IMPACT family member YigZ, at 984,058 to 984,660
_00893
Position (kb) 982
983
984 Strain fitness (log2 ratio) -1
0
1
2 at 981.677 kb on + strand at 981.701 kb on + strand at 981.783 kb on - strand at 981.824 kb on + strand at 981.829 kb on - strand at 981.921 kb on + strand at 981.969 kb on - strand at 982.008 kb on - strand at 982.090 kb on + strand, within MIT1002_00891 at 982.218 kb on - strand, within MIT1002_00891 at 982.257 kb on + strand, within MIT1002_00891 at 982.264 kb on + strand, within MIT1002_00891 at 982.267 kb on - strand, within MIT1002_00891 at 982.272 kb on - strand, within MIT1002_00891 at 982.282 kb on + strand, within MIT1002_00891 at 982.366 kb on - strand, within MIT1002_00891 at 982.488 kb on - strand, within MIT1002_00891 at 982.509 kb on - strand, within MIT1002_00891 at 982.533 kb on - strand at 982.550 kb on + strand at 982.566 kb on - strand at 982.588 kb on - strand at 983.926 kb on + strand at 984.086 kb on + strand at 984.284 kb on - strand, within MIT1002_00893 at 984.317 kb on + strand, within MIT1002_00893 at 984.454 kb on + strand, within MIT1002_00893 at 984.476 kb on + strand, within MIT1002_00893 at 984.503 kb on + strand, within MIT1002_00893 at 984.503 kb on + strand, within MIT1002_00893 at 984.626 kb on + strand at 984.631 kb on + strand at 984.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 981,677 + -1.6 981,701 + +0.0 981,783 - +0.2 981,824 + -0.7 981,829 - -1.7 981,921 + -1.2 981,969 - -0.1 982,008 - +1.5 982,090 + MIT1002_00891 0.12 -1.5 982,218 - MIT1002_00891 0.36 -1.0 982,257 + MIT1002_00891 0.43 +0.4 982,264 + MIT1002_00891 0.44 -0.1 982,267 - MIT1002_00891 0.45 +0.1 982,272 - MIT1002_00891 0.46 +0.2 982,282 + MIT1002_00891 0.47 +0.6 982,366 - MIT1002_00891 0.63 -0.2 982,488 - MIT1002_00891 0.86 -0.4 982,509 - MIT1002_00891 0.90 +0.4 982,533 - -0.1 982,550 + -1.1 982,566 - +2.2 982,588 - +2.3 983,926 + +0.6 984,086 + -0.3 984,284 - MIT1002_00893 0.37 -0.3 984,317 + MIT1002_00893 0.43 +2.3 984,454 + MIT1002_00893 0.66 +0.9 984,476 + MIT1002_00893 0.69 +0.4 984,503 + MIT1002_00893 0.74 +1.5 984,503 + MIT1002_00893 0.74 -0.6 984,626 + -0.2 984,631 + -1.6 984,650 + -1.3
Or see this region's nucleotide sequence