Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00822

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00821 and MIT1002_00822 are separated by 51 nucleotidesMIT1002_00822 and MIT1002_00823 are separated by 174 nucleotidesMIT1002_00823 and MIT1002_00824 overlap by 1 nucleotides MIT1002_00821: MIT1002_00821 - Staphylococcal respiratory response protein A, at 905,451 to 906,203 _00821 MIT1002_00822: MIT1002_00822 - Magnesium transporter MgtE, at 906,255 to 907,613 _00822 MIT1002_00823: MIT1002_00823 - Phosphocarrier protein NPr, at 907,788 to 908,060 _00823 MIT1002_00824: MIT1002_00824 - glmZ(sRNA)-inactivating NTPase, at 908,060 to 908,905 _00824 Position (kb) 906 907 908Strain fitness (log2 ratio) -2 -1 0 1 2at 905.572 kb on - strand, within MIT1002_00821at 905.576 kb on + strand, within MIT1002_00821at 905.655 kb on + strand, within MIT1002_00821at 905.734 kb on + strand, within MIT1002_00821at 905.742 kb on - strand, within MIT1002_00821at 905.826 kb on - strand, within MIT1002_00821at 905.828 kb on - strand, within MIT1002_00821at 905.848 kb on - strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.855 kb on + strand, within MIT1002_00821at 905.857 kb on + strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.870 kb on + strand, within MIT1002_00821at 905.885 kb on + strand, within MIT1002_00821at 905.938 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.954 kb on - strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.047 kb on - strand, within MIT1002_00821at 906.053 kb on - strand, within MIT1002_00821at 906.060 kb on + strand, within MIT1002_00821at 906.085 kb on + strand, within MIT1002_00821at 906.140 kb on + strandat 906.169 kb on - strandat 906.198 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.240 kb on - strandat 906.355 kb on - strandat 906.383 kb on - strandat 906.390 kb on + strandat 906.398 kb on - strand, within MIT1002_00822at 906.398 kb on - strand, within MIT1002_00822at 906.568 kb on - strand, within MIT1002_00822at 906.570 kb on + strand, within MIT1002_00822at 906.570 kb on + strand, within MIT1002_00822at 906.578 kb on - strand, within MIT1002_00822at 906.614 kb on + strand, within MIT1002_00822at 906.748 kb on - strand, within MIT1002_00822at 906.763 kb on - strand, within MIT1002_00822at 906.763 kb on - strand, within MIT1002_00822at 906.797 kb on + strand, within MIT1002_00822at 906.966 kb on - strand, within MIT1002_00822at 907.046 kb on + strand, within MIT1002_00822at 907.107 kb on - strand, within MIT1002_00822at 907.114 kb on + strand, within MIT1002_00822at 907.131 kb on + strand, within MIT1002_00822at 907.139 kb on - strand, within MIT1002_00822at 907.142 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.162 kb on - strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.218 kb on - strand, within MIT1002_00822at 907.218 kb on - strand, within MIT1002_00822at 907.321 kb on + strand, within MIT1002_00822at 907.337 kb on - strand, within MIT1002_00822at 907.337 kb on - strand, within MIT1002_00822at 907.466 kb on - strand, within MIT1002_00822at 907.469 kb on + strand, within MIT1002_00822at 907.548 kb on + strandat 907.556 kb on - strandat 907.556 kb on - strandat 907.558 kb on + strandat 907.587 kb on - strandat 907.661 kb on + strandat 907.669 kb on - strandat 907.822 kb on - strand, within MIT1002_00823at 907.858 kb on - strand, within MIT1002_00823at 907.868 kb on - strand, within MIT1002_00823at 907.878 kb on + strand, within MIT1002_00823at 907.893 kb on + strand, within MIT1002_00823at 907.919 kb on - strand, within MIT1002_00823at 907.992 kb on - strand, within MIT1002_00823at 908.028 kb on + strand, within MIT1002_00823at 908.115 kb on + strandat 908.123 kb on - strandat 908.134 kb on - strandat 908.150 kb on + strand, within MIT1002_00824at 908.150 kb on + strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.163 kb on + strand, within MIT1002_00824at 908.166 kb on - strand, within MIT1002_00824at 908.212 kb on - strand, within MIT1002_00824at 908.218 kb on + strand, within MIT1002_00824at 908.266 kb on - strand, within MIT1002_00824at 908.268 kb on + strand, within MIT1002_00824at 908.277 kb on + strand, within MIT1002_00824at 908.301 kb on + strand, within MIT1002_00824at 908.449 kb on + strand, within MIT1002_00824at 908.457 kb on - strand, within MIT1002_00824at 908.474 kb on - strand, within MIT1002_00824at 908.499 kb on - strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.515 kb on - strand, within MIT1002_00824at 908.596 kb on + strand, within MIT1002_00824at 908.604 kb on - strand, within MIT1002_00824

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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905,572 - MIT1002_00821 0.16 +1.2
905,576 + MIT1002_00821 0.17 -0.7
905,655 + MIT1002_00821 0.27 -0.4
905,734 + MIT1002_00821 0.38 -0.2
905,742 - MIT1002_00821 0.39 -0.2
905,826 - MIT1002_00821 0.50 +0.2
905,828 - MIT1002_00821 0.50 -0.7
905,848 - MIT1002_00821 0.53 +0.3
905,850 + MIT1002_00821 0.53 -2.6
905,850 + MIT1002_00821 0.53 +0.8
905,855 + MIT1002_00821 0.54 -2.1
905,857 + MIT1002_00821 0.54 +0.7
905,865 - MIT1002_00821 0.55 -0.6
905,865 - MIT1002_00821 0.55 +0.7
905,870 + MIT1002_00821 0.56 -1.3
905,885 + MIT1002_00821 0.58 -0.5
905,938 + MIT1002_00821 0.65 +0.6
905,946 + MIT1002_00821 0.66 -0.1
905,946 + MIT1002_00821 0.66 -0.8
905,954 - MIT1002_00821 0.67 -0.9
906,023 + MIT1002_00821 0.76 +1.0
906,023 + MIT1002_00821 0.76 -1.9
906,024 + MIT1002_00821 0.76 -0.1
906,024 + MIT1002_00821 0.76 +1.1
906,045 + MIT1002_00821 0.79 -0.1
906,045 + MIT1002_00821 0.79 -0.3
906,047 - MIT1002_00821 0.79 +1.2
906,053 - MIT1002_00821 0.80 -1.5
906,060 + MIT1002_00821 0.81 +1.6
906,085 + MIT1002_00821 0.84 +0.3
906,140 + +0.6
906,169 - +1.2
906,198 - -0.1
906,212 - -1.0
906,212 - -0.2
906,240 - +0.3
906,355 - +0.4
906,383 - +1.2
906,390 + -0.7
906,398 - MIT1002_00822 0.11 +0.4
906,398 - MIT1002_00822 0.11 +2.0
906,568 - MIT1002_00822 0.23 +0.2
906,570 + MIT1002_00822 0.23 -0.6
906,570 + MIT1002_00822 0.23 +0.9
906,578 - MIT1002_00822 0.24 +0.3
906,614 + MIT1002_00822 0.26 -1.0
906,748 - MIT1002_00822 0.36 -0.8
906,763 - MIT1002_00822 0.37 -0.3
906,763 - MIT1002_00822 0.37 -1.7
906,797 + MIT1002_00822 0.40 -0.5
906,966 - MIT1002_00822 0.52 -1.0
907,046 + MIT1002_00822 0.58 +0.3
907,107 - MIT1002_00822 0.63 -2.0
907,114 + MIT1002_00822 0.63 -0.7
907,131 + MIT1002_00822 0.64 +1.2
907,139 - MIT1002_00822 0.65 -2.0
907,142 + MIT1002_00822 0.65 -0.4
907,149 + MIT1002_00822 0.66 -0.3
907,149 + MIT1002_00822 0.66 +0.7
907,162 - MIT1002_00822 0.67 +1.7
907,210 + MIT1002_00822 0.70 -0.5
907,210 + MIT1002_00822 0.70 +0.7
907,210 + MIT1002_00822 0.70 -0.8
907,210 + MIT1002_00822 0.70 +0.3
907,210 + MIT1002_00822 0.70 -0.4
907,218 - MIT1002_00822 0.71 +2.0
907,218 - MIT1002_00822 0.71 -0.1
907,321 + MIT1002_00822 0.78 -0.3
907,337 - MIT1002_00822 0.80 +0.7
907,337 - MIT1002_00822 0.80 +0.7
907,466 - MIT1002_00822 0.89 +0.7
907,469 + MIT1002_00822 0.89 +0.7
907,548 + -1.1
907,556 - -0.2
907,556 - +2.6
907,558 + -0.1
907,587 - +1.5
907,661 + -0.1
907,669 - +0.6
907,822 - MIT1002_00823 0.12 +0.7
907,858 - MIT1002_00823 0.26 +0.6
907,868 - MIT1002_00823 0.29 +0.2
907,878 + MIT1002_00823 0.33 -0.6
907,893 + MIT1002_00823 0.38 +2.0
907,919 - MIT1002_00823 0.48 -1.5
907,992 - MIT1002_00823 0.75 +0.4
908,028 + MIT1002_00823 0.88 -0.3
908,115 + +0.7
908,123 - +0.7
908,134 - +1.8
908,150 + MIT1002_00824 0.11 +1.3
908,150 + MIT1002_00824 0.11 +0.2
908,158 - MIT1002_00824 0.12 +0.5
908,158 - MIT1002_00824 0.12 +1.2
908,158 - MIT1002_00824 0.12 -0.1
908,163 + MIT1002_00824 0.12 -1.1
908,166 - MIT1002_00824 0.13 +0.2
908,212 - MIT1002_00824 0.18 +0.2
908,218 + MIT1002_00824 0.19 +0.5
908,266 - MIT1002_00824 0.24 +1.5
908,268 + MIT1002_00824 0.25 -0.2
908,277 + MIT1002_00824 0.26 +0.1
908,301 + MIT1002_00824 0.28 +0.1
908,449 + MIT1002_00824 0.46 +0.2
908,457 - MIT1002_00824 0.47 -1.8
908,474 - MIT1002_00824 0.49 +0.7
908,499 - MIT1002_00824 0.52 -0.6
908,507 + MIT1002_00824 0.53 -0.5
908,507 + MIT1002_00824 0.53 +1.3
908,507 + MIT1002_00824 0.53 +0.8
908,515 - MIT1002_00824 0.54 -0.0
908,596 + MIT1002_00824 0.63 +0.2
908,604 - MIT1002_00824 0.64 -0.8

Or see this region's nucleotide sequence