Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00797 and MIT1002_00798 are separated by 188 nucleotides MIT1002_00798 and MIT1002_00799 are separated by 15 nucleotides MIT1002_00799 and MIT1002_00800 are separated by 65 nucleotides MIT1002_00800 and MIT1002_00801 are separated by 3 nucleotides
MIT1002_00797: MIT1002_00797 - type IV pilus biogenesis/stability protein PilW, at 884,390 to 885,037
_00797
MIT1002_00798: MIT1002_00798 - hypothetical protein, at 885,226 to 885,927
_00798
MIT1002_00799: MIT1002_00799 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 885,943 to 886,788
_00799
MIT1002_00800: MIT1002_00800 - Heme oxygenase, at 886,854 to 887,525
_00800
MIT1002_00801: MIT1002_00801 - Long-chain-fatty-acid--CoA ligase FadD15, at 887,529 to 889,037
_00801
Position (kb) 885
886
887 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 885.205 kb on - strand at 885.207 kb on - strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.214 kb on + strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.222 kb on - strand at 885.292 kb on + strand at 885.315 kb on - strand, within MIT1002_00798 at 885.494 kb on - strand, within MIT1002_00798 at 885.496 kb on + strand, within MIT1002_00798 at 885.501 kb on + strand, within MIT1002_00798 at 885.505 kb on - strand, within MIT1002_00798 at 885.523 kb on + strand, within MIT1002_00798 at 885.523 kb on + strand, within MIT1002_00798 at 885.531 kb on - strand, within MIT1002_00798 at 885.574 kb on - strand, within MIT1002_00798 at 885.579 kb on + strand, within MIT1002_00798 at 885.589 kb on + strand, within MIT1002_00798 at 885.589 kb on + strand, within MIT1002_00798 at 885.597 kb on - strand, within MIT1002_00798 at 885.597 kb on - strand, within MIT1002_00798 at 885.608 kb on + strand, within MIT1002_00798 at 885.706 kb on - strand, within MIT1002_00798 at 885.810 kb on + strand, within MIT1002_00798 at 885.854 kb on + strand, within MIT1002_00798 at 885.854 kb on + strand, within MIT1002_00798 at 885.861 kb on - strand at 885.869 kb on + strand at 885.934 kb on - strand at 885.949 kb on - strand at 886.060 kb on + strand, within MIT1002_00799 at 886.060 kb on + strand, within MIT1002_00799 at 886.068 kb on - strand, within MIT1002_00799 at 886.068 kb on - strand, within MIT1002_00799 at 886.109 kb on + strand, within MIT1002_00799 at 886.117 kb on - strand, within MIT1002_00799 at 886.203 kb on - strand, within MIT1002_00799 at 886.265 kb on - strand, within MIT1002_00799 at 886.362 kb on - strand, within MIT1002_00799 at 886.375 kb on + strand, within MIT1002_00799 at 886.383 kb on - strand, within MIT1002_00799 at 886.402 kb on - strand, within MIT1002_00799 at 886.421 kb on - strand, within MIT1002_00799 at 886.421 kb on - strand, within MIT1002_00799 at 886.421 kb on - strand, within MIT1002_00799 at 886.519 kb on + strand, within MIT1002_00799 at 886.561 kb on - strand, within MIT1002_00799 at 886.563 kb on + strand, within MIT1002_00799 at 886.622 kb on + strand, within MIT1002_00799 at 886.632 kb on + strand, within MIT1002_00799 at 886.725 kb on - strand at 886.758 kb on + strand at 886.776 kb on + strand at 886.853 kb on - strand at 886.865 kb on + strand at 886.883 kb on + strand at 886.883 kb on - strand at 886.906 kb on + strand at 886.906 kb on - strand at 887.010 kb on + strand, within MIT1002_00800 at 887.018 kb on - strand, within MIT1002_00800 at 887.020 kb on + strand, within MIT1002_00800 at 887.055 kb on - strand, within MIT1002_00800 at 887.099 kb on + strand, within MIT1002_00800 at 887.107 kb on - strand, within MIT1002_00800 at 887.121 kb on + strand, within MIT1002_00800 at 887.194 kb on - strand, within MIT1002_00800 at 887.358 kb on - strand, within MIT1002_00800 at 887.402 kb on + strand, within MIT1002_00800 at 887.453 kb on + strand, within MIT1002_00800 at 887.480 kb on - strand at 887.489 kb on + strand at 887.499 kb on + strand at 887.507 kb on - strand at 887.507 kb on - strand at 887.578 kb on + strand at 887.580 kb on + strand at 887.586 kb on - strand at 887.588 kb on - strand at 887.612 kb on + strand at 887.613 kb on + strand at 887.621 kb on - strand at 887.621 kb on - strand at 887.676 kb on + strand at 887.737 kb on + strand, within MIT1002_00801 at 887.756 kb on + strand, within MIT1002_00801
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 885,205 - -1.5 885,207 - -0.6 885,214 + +0.2 885,214 + -0.4 885,214 + -0.2 885,214 + -0.1 885,214 + -0.4 885,214 + +0.2 885,222 - -0.6 885,222 - +0.3 885,222 - -0.2 885,222 - -0.7 885,292 + +0.6 885,315 - MIT1002_00798 0.13 -0.1 885,494 - MIT1002_00798 0.38 +3.6 885,496 + MIT1002_00798 0.38 -0.8 885,501 + MIT1002_00798 0.39 +0.7 885,505 - MIT1002_00798 0.40 -0.7 885,523 + MIT1002_00798 0.42 +1.3 885,523 + MIT1002_00798 0.42 -0.3 885,531 - MIT1002_00798 0.43 -0.8 885,574 - MIT1002_00798 0.50 -0.7 885,579 + MIT1002_00798 0.50 +0.7 885,589 + MIT1002_00798 0.52 -1.2 885,589 + MIT1002_00798 0.52 +0.7 885,597 - MIT1002_00798 0.53 +0.1 885,597 - MIT1002_00798 0.53 -0.6 885,608 + MIT1002_00798 0.54 +1.1 885,706 - MIT1002_00798 0.68 -0.9 885,810 + MIT1002_00798 0.83 -1.3 885,854 + MIT1002_00798 0.89 +0.2 885,854 + MIT1002_00798 0.89 +0.4 885,861 - -1.5 885,869 + +1.1 885,934 - +1.7 885,949 - +0.7 886,060 + MIT1002_00799 0.14 +0.0 886,060 + MIT1002_00799 0.14 -0.2 886,068 - MIT1002_00799 0.15 +3.8 886,068 - MIT1002_00799 0.15 +2.0 886,109 + MIT1002_00799 0.20 -1.4 886,117 - MIT1002_00799 0.21 +2.0 886,203 - MIT1002_00799 0.31 +0.2 886,265 - MIT1002_00799 0.38 +0.7 886,362 - MIT1002_00799 0.50 -1.0 886,375 + MIT1002_00799 0.51 +1.0 886,383 - MIT1002_00799 0.52 +1.2 886,402 - MIT1002_00799 0.54 -0.4 886,421 - MIT1002_00799 0.57 +1.7 886,421 - MIT1002_00799 0.57 +1.0 886,421 - MIT1002_00799 0.57 -0.5 886,519 + MIT1002_00799 0.68 -0.3 886,561 - MIT1002_00799 0.73 -1.2 886,563 + MIT1002_00799 0.73 +1.3 886,622 + MIT1002_00799 0.80 -1.8 886,632 + MIT1002_00799 0.81 -2.1 886,725 - -0.3 886,758 + -1.9 886,776 + +0.0 886,853 - +1.6 886,865 + +1.3 886,883 + -1.2 886,883 - -0.5 886,906 + +1.2 886,906 - +0.2 887,010 + MIT1002_00800 0.23 +0.3 887,018 - MIT1002_00800 0.24 -0.8 887,020 + MIT1002_00800 0.25 -0.2 887,055 - MIT1002_00800 0.30 -0.3 887,099 + MIT1002_00800 0.36 -0.1 887,107 - MIT1002_00800 0.38 -1.8 887,121 + MIT1002_00800 0.40 +0.5 887,194 - MIT1002_00800 0.51 +0.3 887,358 - MIT1002_00800 0.75 +1.0 887,402 + MIT1002_00800 0.82 +0.2 887,453 + MIT1002_00800 0.89 +2.3 887,480 - +0.4 887,489 + -2.3 887,499 + +0.7 887,507 - +1.4 887,507 - -0.6 887,578 + +0.2 887,580 + +0.0 887,586 - +0.5 887,588 - +0.3 887,612 + +0.3 887,613 + +0.0 887,621 - +0.4 887,621 - -1.3 887,676 + -1.0 887,737 + MIT1002_00801 0.14 -0.7 887,756 + MIT1002_00801 0.15 -1.0
Or see this region's nucleotide sequence