Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00791

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00790 and MIT1002_00791 are separated by 251 nucleotidesMIT1002_00791 and MIT1002_00792 are separated by 27 nucleotidesMIT1002_00792 and MIT1002_00793 are separated by 101 nucleotides MIT1002_00790: MIT1002_00790 - Recombination protein O, at 875,468 to 876,181 _00790 MIT1002_00791: MIT1002_00791 - Pyridoxine 5'-phosphate synthase, at 876,433 to 877,170 _00791 MIT1002_00792: MIT1002_00792 - Holo-[acyl-carrier-protein] synthase, at 877,198 to 877,578 _00792 MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122 _00793 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.454 kb on - strandat 875.460 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.507 kb on + strandat 875.511 kb on + strandat 875.517 kb on - strandat 875.617 kb on + strand, within MIT1002_00790at 875.699 kb on - strand, within MIT1002_00790at 875.703 kb on + strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.728 kb on + strand, within MIT1002_00790at 875.731 kb on - strand, within MIT1002_00790at 875.742 kb on + strand, within MIT1002_00790at 875.787 kb on + strand, within MIT1002_00790at 875.804 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.902 kb on + strand, within MIT1002_00790at 875.937 kb on - strand, within MIT1002_00790at 875.941 kb on + strand, within MIT1002_00790at 875.972 kb on + strand, within MIT1002_00790at 876.020 kb on + strand, within MIT1002_00790at 876.069 kb on - strand, within MIT1002_00790at 876.074 kb on - strand, within MIT1002_00790at 876.115 kb on + strandat 876.123 kb on - strandat 876.131 kb on + strandat 876.160 kb on + strandat 876.354 kb on + strandat 877.186 kb on + strandat 877.186 kb on + strandat 877.568 kb on + strandat 877.568 kb on + strandat 877.587 kb on + strandat 877.595 kb on - strandat 877.666 kb on - strandat 877.679 kb on - strandat 877.689 kb on - strandat 877.689 kb on - strandat 877.711 kb on + strandat 877.711 kb on + strandat 877.719 kb on - strandat 877.763 kb on + strandat 877.763 kb on + strandat 877.763 kb on - strandat 877.771 kb on - strandat 877.771 kb on - strandat 877.831 kb on - strand, within MIT1002_00793at 877.853 kb on - strand, within MIT1002_00793at 877.866 kb on + strand, within MIT1002_00793at 877.872 kb on + strand, within MIT1002_00793at 877.874 kb on - strand, within MIT1002_00793at 877.935 kb on + strand, within MIT1002_00793at 878.057 kb on + strand, within MIT1002_00793at 878.064 kb on - strand, within MIT1002_00793at 878.068 kb on + strand, within MIT1002_00793at 878.074 kb on + strand, within MIT1002_00793at 878.081 kb on - strand, within MIT1002_00793at 878.084 kb on + strand, within MIT1002_00793at 878.089 kb on + strand, within MIT1002_00793at 878.095 kb on + strand, within MIT1002_00793at 878.095 kb on - strand, within MIT1002_00793at 878.097 kb on + strand, within MIT1002_00793at 878.131 kb on + strand, within MIT1002_00793at 878.151 kb on + strand, within MIT1002_00793at 878.155 kb on + strand, within MIT1002_00793

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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875,454 - +0.4
875,460 + +2.3
875,490 + +0.4
875,490 + +0.6
875,490 + -1.1
875,498 - -0.8
875,498 - -0.3
875,498 - -0.4
875,507 + +0.9
875,511 + -0.1
875,517 - -0.1
875,617 + MIT1002_00790 0.21 -0.9
875,699 - MIT1002_00790 0.32 +1.4
875,703 + MIT1002_00790 0.33 -0.4
875,711 - MIT1002_00790 0.34 +0.7
875,711 - MIT1002_00790 0.34 +0.5
875,723 + MIT1002_00790 0.36 +2.3
875,723 + MIT1002_00790 0.36 -1.6
875,728 + MIT1002_00790 0.36 -0.3
875,731 - MIT1002_00790 0.37 -1.4
875,742 + MIT1002_00790 0.38 +0.0
875,787 + MIT1002_00790 0.45 -1.0
875,804 + MIT1002_00790 0.47 +1.9
875,844 + MIT1002_00790 0.53 -1.7
875,844 + MIT1002_00790 0.53 +0.7
875,852 - MIT1002_00790 0.54 -0.9
875,852 - MIT1002_00790 0.54 -0.7
875,864 - MIT1002_00790 0.55 +0.3
875,864 - MIT1002_00790 0.55 -0.2
875,902 + MIT1002_00790 0.61 +0.4
875,937 - MIT1002_00790 0.66 +1.2
875,941 + MIT1002_00790 0.66 -3.6
875,972 + MIT1002_00790 0.71 -0.7
876,020 + MIT1002_00790 0.77 +0.4
876,069 - MIT1002_00790 0.84 -0.3
876,074 - MIT1002_00790 0.85 -0.3
876,115 + -1.7
876,123 - -0.9
876,131 + +0.8
876,160 + -0.9
876,354 + +1.3
877,186 + +0.5
877,186 + +1.9
877,568 + +0.4
877,568 + -1.4
877,587 + +0.5
877,595 - -0.3
877,666 - -0.3
877,679 - -1.4
877,689 - +2.4
877,689 - -0.8
877,711 + -0.2
877,711 + -1.3
877,719 - +0.0
877,763 + -0.1
877,763 + -0.1
877,763 - -0.8
877,771 - -0.6
877,771 - -0.3
877,831 - MIT1002_00793 0.10 -1.1
877,853 - MIT1002_00793 0.12 +0.0
877,866 + MIT1002_00793 0.13 -0.8
877,872 + MIT1002_00793 0.13 +0.6
877,874 - MIT1002_00793 0.13 +0.0
877,935 + MIT1002_00793 0.18 -1.4
878,057 + MIT1002_00793 0.26 +0.2
878,064 - MIT1002_00793 0.27 +0.2
878,068 + MIT1002_00793 0.27 +1.1
878,074 + MIT1002_00793 0.27 +2.2
878,081 - MIT1002_00793 0.28 +0.7
878,084 + MIT1002_00793 0.28 +1.1
878,089 + MIT1002_00793 0.28 +0.5
878,095 + MIT1002_00793 0.29 -0.1
878,095 - MIT1002_00793 0.29 -1.5
878,097 + MIT1002_00793 0.29 +0.7
878,131 + MIT1002_00793 0.31 +0.8
878,151 + MIT1002_00793 0.33 +0.1
878,155 + MIT1002_00793 0.33 +0.2

Or see this region's nucleotide sequence