Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00749 and MIT1002_00750 are separated by 117 nucleotides MIT1002_00750 and MIT1002_00751 are separated by 308 nucleotides
MIT1002_00749: MIT1002_00749 - Recombination-associated protein RdgC, at 821,123 to 822,034
_00749
MIT1002_00750: MIT1002_00750 - Sensor kinase protein RcsC, at 822,152 to 823,828
_00750
MIT1002_00751: MIT1002_00751 - Phosphate regulon transcriptional regulatory protein PhoB, at 824,137 to 824,826
_00751
Position (kb) 822
823
824 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 821.171 kb on - strand at 821.191 kb on + strand at 821.212 kb on - strand at 821.416 kb on + strand, within MIT1002_00749 at 821.416 kb on + strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.424 kb on - strand, within MIT1002_00749 at 821.457 kb on - strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.467 kb on + strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.475 kb on - strand, within MIT1002_00749 at 821.477 kb on + strand, within MIT1002_00749 at 821.491 kb on + strand, within MIT1002_00749 at 821.499 kb on - strand, within MIT1002_00749 at 821.499 kb on - strand, within MIT1002_00749 at 821.593 kb on - strand, within MIT1002_00749 at 821.612 kb on + strand, within MIT1002_00749 at 821.663 kb on - strand, within MIT1002_00749 at 821.790 kb on - strand, within MIT1002_00749 at 821.794 kb on + strand, within MIT1002_00749 at 821.797 kb on - strand, within MIT1002_00749 at 821.825 kb on + strand, within MIT1002_00749 at 821.832 kb on - strand, within MIT1002_00749 at 821.914 kb on - strand, within MIT1002_00749 at 822.044 kb on - strand at 822.087 kb on - strand at 822.192 kb on - strand at 822.202 kb on + strand at 822.209 kb on - strand at 822.217 kb on + strand at 822.217 kb on + strand at 822.217 kb on + strand at 822.225 kb on - strand at 822.225 kb on - strand at 822.225 kb on - strand at 822.225 kb on - strand at 822.225 kb on - strand at 822.225 kb on - strand at 822.246 kb on - strand at 822.283 kb on - strand at 822.309 kb on + strand at 822.328 kb on + strand, within MIT1002_00750 at 822.328 kb on + strand, within MIT1002_00750 at 822.391 kb on + strand, within MIT1002_00750 at 822.445 kb on - strand, within MIT1002_00750 at 822.492 kb on + strand, within MIT1002_00750 at 822.500 kb on - strand, within MIT1002_00750 at 822.512 kb on - strand, within MIT1002_00750 at 822.547 kb on + strand, within MIT1002_00750 at 822.555 kb on - strand, within MIT1002_00750 at 822.628 kb on + strand, within MIT1002_00750 at 822.628 kb on + strand, within MIT1002_00750 at 822.628 kb on + strand, within MIT1002_00750 at 822.631 kb on - strand, within MIT1002_00750 at 822.636 kb on - strand, within MIT1002_00750 at 822.636 kb on - strand, within MIT1002_00750 at 822.636 kb on - strand, within MIT1002_00750 at 822.636 kb on - strand, within MIT1002_00750 at 822.661 kb on + strand, within MIT1002_00750 at 822.669 kb on - strand, within MIT1002_00750 at 822.714 kb on - strand, within MIT1002_00750 at 822.743 kb on + strand, within MIT1002_00750 at 822.751 kb on - strand, within MIT1002_00750 at 822.901 kb on - strand, within MIT1002_00750 at 822.977 kb on - strand, within MIT1002_00750 at 823.020 kb on - strand, within MIT1002_00750 at 823.047 kb on - strand, within MIT1002_00750 at 823.047 kb on - strand, within MIT1002_00750 at 823.047 kb on - strand, within MIT1002_00750 at 823.047 kb on - strand, within MIT1002_00750 at 823.047 kb on - strand, within MIT1002_00750 at 823.050 kb on + strand, within MIT1002_00750 at 823.058 kb on - strand, within MIT1002_00750 at 823.155 kb on + strand, within MIT1002_00750 at 823.155 kb on + strand, within MIT1002_00750 at 823.207 kb on - strand, within MIT1002_00750 at 823.217 kb on - strand, within MIT1002_00750 at 823.264 kb on + strand, within MIT1002_00750 at 823.266 kb on + strand, within MIT1002_00750 at 823.272 kb on - strand, within MIT1002_00750 at 823.272 kb on - strand, within MIT1002_00750 at 823.300 kb on + strand, within MIT1002_00750 at 823.411 kb on + strand, within MIT1002_00750 at 823.465 kb on + strand, within MIT1002_00750 at 823.558 kb on + strand, within MIT1002_00750 at 823.558 kb on + strand, within MIT1002_00750 at 823.558 kb on + strand, within MIT1002_00750 at 823.561 kb on - strand, within MIT1002_00750 at 823.566 kb on - strand, within MIT1002_00750 at 823.566 kb on - strand, within MIT1002_00750 at 823.571 kb on - strand, within MIT1002_00750 at 823.578 kb on - strand, within MIT1002_00750 at 823.583 kb on - strand, within MIT1002_00750 at 823.619 kb on + strand, within MIT1002_00750 at 823.621 kb on + strand, within MIT1002_00750 at 823.648 kb on + strand, within MIT1002_00750 at 823.649 kb on + strand, within MIT1002_00750 at 823.714 kb on - strand at 823.782 kb on + strand at 823.792 kb on + strand at 823.800 kb on - strand at 823.805 kb on - strand at 823.841 kb on + strand at 823.841 kb on + strand at 823.849 kb on - strand at 823.849 kb on - strand at 823.849 kb on - strand at 823.849 kb on - strand at 823.861 kb on + strand at 823.866 kb on + strand at 823.866 kb on + strand at 823.874 kb on - strand at 823.874 kb on - strand at 823.874 kb on - strand at 823.967 kb on + strand at 824.147 kb on - strand at 824.149 kb on - strand at 824.286 kb on - strand, within MIT1002_00751 at 824.326 kb on - strand, within MIT1002_00751 at 824.326 kb on - strand, within MIT1002_00751 at 824.336 kb on + strand, within MIT1002_00751 at 824.660 kb on + strand, within MIT1002_00751
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 821,171 - -0.6 821,191 + +2.4 821,212 - +1.2 821,416 + MIT1002_00749 0.32 +1.1 821,416 + MIT1002_00749 0.32 -0.7 821,424 - MIT1002_00749 0.33 -1.1 821,424 - MIT1002_00749 0.33 +0.8 821,424 - MIT1002_00749 0.33 -2.1 821,457 - MIT1002_00749 0.37 -0.2 821,467 + MIT1002_00749 0.38 +0.5 821,467 + MIT1002_00749 0.38 -0.7 821,467 + MIT1002_00749 0.38 -0.3 821,467 + MIT1002_00749 0.38 -0.8 821,475 - MIT1002_00749 0.39 +1.8 821,475 - MIT1002_00749 0.39 +0.6 821,475 - MIT1002_00749 0.39 +0.3 821,477 + MIT1002_00749 0.39 +0.4 821,491 + MIT1002_00749 0.40 -0.6 821,499 - MIT1002_00749 0.41 -2.1 821,499 - MIT1002_00749 0.41 +0.1 821,593 - MIT1002_00749 0.52 -1.3 821,612 + MIT1002_00749 0.54 -0.5 821,663 - MIT1002_00749 0.59 -0.8 821,790 - MIT1002_00749 0.73 -1.6 821,794 + MIT1002_00749 0.74 -0.7 821,797 - MIT1002_00749 0.74 +1.0 821,825 + MIT1002_00749 0.77 +0.2 821,832 - MIT1002_00749 0.78 -0.9 821,914 - MIT1002_00749 0.87 +0.1 822,044 - +0.1 822,087 - +2.0 822,192 - -0.3 822,202 + +0.6 822,209 - +0.6 822,217 + -1.5 822,217 + -0.3 822,217 + -0.3 822,225 - +0.6 822,225 - +1.6 822,225 - +2.1 822,225 - +1.4 822,225 - +0.5 822,225 - +0.2 822,246 - -0.1 822,283 - -0.3 822,309 + -1.6 822,328 + MIT1002_00750 0.10 +0.8 822,328 + MIT1002_00750 0.10 -0.9 822,391 + MIT1002_00750 0.14 -0.2 822,445 - MIT1002_00750 0.17 -1.0 822,492 + MIT1002_00750 0.20 +0.2 822,500 - MIT1002_00750 0.21 +1.2 822,512 - MIT1002_00750 0.21 -1.9 822,547 + MIT1002_00750 0.24 +1.8 822,555 - MIT1002_00750 0.24 -1.3 822,628 + MIT1002_00750 0.28 +0.7 822,628 + MIT1002_00750 0.28 -0.5 822,628 + MIT1002_00750 0.28 -0.2 822,631 - MIT1002_00750 0.29 -0.2 822,636 - MIT1002_00750 0.29 -2.3 822,636 - MIT1002_00750 0.29 +1.6 822,636 - MIT1002_00750 0.29 -0.4 822,636 - MIT1002_00750 0.29 +1.1 822,661 + MIT1002_00750 0.30 +0.3 822,669 - MIT1002_00750 0.31 -0.3 822,714 - MIT1002_00750 0.34 -0.5 822,743 + MIT1002_00750 0.35 +0.2 822,751 - MIT1002_00750 0.36 -2.1 822,901 - MIT1002_00750 0.45 -1.2 822,977 - MIT1002_00750 0.49 +0.1 823,020 - MIT1002_00750 0.52 +2.9 823,047 - MIT1002_00750 0.53 +0.2 823,047 - MIT1002_00750 0.53 +0.4 823,047 - MIT1002_00750 0.53 -0.8 823,047 - MIT1002_00750 0.53 -4.1 823,047 - MIT1002_00750 0.53 +0.3 823,050 + MIT1002_00750 0.54 -0.2 823,058 - MIT1002_00750 0.54 +0.3 823,155 + MIT1002_00750 0.60 +0.1 823,155 + MIT1002_00750 0.60 -1.1 823,207 - MIT1002_00750 0.63 +0.4 823,217 - MIT1002_00750 0.64 -0.1 823,264 + MIT1002_00750 0.66 +0.5 823,266 + MIT1002_00750 0.66 +0.1 823,272 - MIT1002_00750 0.67 +0.8 823,272 - MIT1002_00750 0.67 -2.6 823,300 + MIT1002_00750 0.68 +1.8 823,411 + MIT1002_00750 0.75 -1.6 823,465 + MIT1002_00750 0.78 +0.2 823,558 + MIT1002_00750 0.84 +0.9 823,558 + MIT1002_00750 0.84 -0.8 823,558 + MIT1002_00750 0.84 -0.6 823,561 - MIT1002_00750 0.84 +0.9 823,566 - MIT1002_00750 0.84 +0.8 823,566 - MIT1002_00750 0.84 +0.9 823,571 - MIT1002_00750 0.85 +0.8 823,578 - MIT1002_00750 0.85 -1.5 823,583 - MIT1002_00750 0.85 -0.9 823,619 + MIT1002_00750 0.87 -2.2 823,621 + MIT1002_00750 0.88 +0.2 823,648 + MIT1002_00750 0.89 -0.8 823,649 + MIT1002_00750 0.89 +0.2 823,714 - -1.1 823,782 + -1.8 823,792 + -0.1 823,800 - -0.2 823,805 - -0.4 823,841 + +1.3 823,841 + -0.6 823,849 - -0.0 823,849 - +0.4 823,849 - -0.4 823,849 - -1.0 823,861 + +0.0 823,866 + +1.3 823,866 + -0.6 823,874 - -0.2 823,874 - +1.7 823,874 - -0.2 823,967 + -0.1 824,147 - +0.8 824,149 - +0.8 824,286 - MIT1002_00751 0.22 -1.8 824,326 - MIT1002_00751 0.27 -0.4 824,326 - MIT1002_00751 0.27 +0.4 824,336 + MIT1002_00751 0.29 -0.8 824,660 + MIT1002_00751 0.76 -1.2
Or see this region's nucleotide sequence