Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00738 and MIT1002_00739 are separated by 192 nucleotides MIT1002_00739 and MIT1002_00740 overlap by 11 nucleotides MIT1002_00740 and MIT1002_00741 are separated by 281 nucleotides
MIT1002_00738: MIT1002_00738 - t(6)A37 threonylcarbamoyladenosine biosynthesis protein, at 810,163 to 811,188
_00738
MIT1002_00739: MIT1002_00739 - phosphonoacetate hydrolase, at 811,381 to 812,697
_00739
MIT1002_00740: MIT1002_00740 - G3P acyltransferase, at 812,687 to 813,289
_00740
MIT1002_00741: MIT1002_00741 - Dihydroneopterin aldolase, at 813,571 to 813,924
_00741
Position (kb) 811
812
813 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 811.244 kb on - strand at 811.246 kb on - strand at 811.246 kb on - strand at 811.267 kb on + strand at 811.312 kb on + strand at 811.377 kb on - strand at 811.465 kb on - strand at 811.465 kb on - strand at 811.533 kb on - strand, within MIT1002_00739 at 811.563 kb on + strand, within MIT1002_00739 at 811.617 kb on - strand, within MIT1002_00739 at 811.625 kb on - strand, within MIT1002_00739 at 811.640 kb on + strand, within MIT1002_00739 at 811.648 kb on - strand, within MIT1002_00739 at 811.648 kb on - strand, within MIT1002_00739 at 811.694 kb on + strand, within MIT1002_00739 at 811.711 kb on + strand, within MIT1002_00739 at 811.777 kb on - strand, within MIT1002_00739 at 811.791 kb on + strand, within MIT1002_00739 at 811.791 kb on + strand, within MIT1002_00739 at 811.791 kb on + strand, within MIT1002_00739 at 811.797 kb on - strand, within MIT1002_00739 at 811.799 kb on - strand, within MIT1002_00739 at 811.799 kb on - strand, within MIT1002_00739 at 811.810 kb on + strand, within MIT1002_00739 at 811.818 kb on - strand, within MIT1002_00739 at 811.818 kb on - strand, within MIT1002_00739 at 811.818 kb on - strand, within MIT1002_00739 at 811.827 kb on + strand, within MIT1002_00739 at 811.890 kb on - strand, within MIT1002_00739 at 811.914 kb on + strand, within MIT1002_00739 at 811.954 kb on - strand, within MIT1002_00739 at 812.003 kb on + strand, within MIT1002_00739 at 812.004 kb on + strand, within MIT1002_00739 at 812.143 kb on + strand, within MIT1002_00739 at 812.152 kb on - strand, within MIT1002_00739 at 812.241 kb on + strand, within MIT1002_00739 at 812.281 kb on + strand, within MIT1002_00739 at 812.349 kb on + strand, within MIT1002_00739 at 812.372 kb on - strand, within MIT1002_00739 at 812.381 kb on + strand, within MIT1002_00739 at 812.381 kb on + strand, within MIT1002_00739 at 812.389 kb on - strand, within MIT1002_00739 at 812.405 kb on + strand, within MIT1002_00739 at 812.413 kb on + strand, within MIT1002_00739 at 812.472 kb on + strand, within MIT1002_00739 at 812.497 kb on + strand, within MIT1002_00739 at 812.500 kb on + strand, within MIT1002_00739 at 812.541 kb on + strand, within MIT1002_00739 at 812.558 kb on - strand, within MIT1002_00739 at 812.597 kb on + strand at 812.612 kb on - strand at 812.612 kb on - strand at 812.671 kb on - strand at 812.787 kb on - strand, within MIT1002_00740 at 812.810 kb on - strand, within MIT1002_00740 at 812.844 kb on - strand, within MIT1002_00740 at 812.870 kb on + strand, within MIT1002_00740 at 812.893 kb on + strand, within MIT1002_00740 at 812.893 kb on + strand, within MIT1002_00740 at 812.896 kb on - strand, within MIT1002_00740 at 812.945 kb on - strand, within MIT1002_00740 at 812.952 kb on - strand, within MIT1002_00740 at 813.154 kb on + strand, within MIT1002_00740 at 813.209 kb on - strand, within MIT1002_00740 at 813.409 kb on + strand at 813.409 kb on + strand at 813.457 kb on + strand at 813.499 kb on + strand at 813.509 kb on + strand at 813.509 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 811,244 - -1.6 811,246 - -0.8 811,246 - +1.3 811,267 + -1.3 811,312 + +0.9 811,377 - +0.5 811,465 - +0.6 811,465 - +0.0 811,533 - MIT1002_00739 0.12 -0.9 811,563 + MIT1002_00739 0.14 -1.0 811,617 - MIT1002_00739 0.18 +0.2 811,625 - MIT1002_00739 0.19 -1.0 811,640 + MIT1002_00739 0.20 -1.2 811,648 - MIT1002_00739 0.20 -1.9 811,648 - MIT1002_00739 0.20 +0.4 811,694 + MIT1002_00739 0.24 -0.6 811,711 + MIT1002_00739 0.25 -0.3 811,777 - MIT1002_00739 0.30 -0.4 811,791 + MIT1002_00739 0.31 +2.4 811,791 + MIT1002_00739 0.31 -0.7 811,791 + MIT1002_00739 0.31 -0.6 811,797 - MIT1002_00739 0.32 +0.1 811,799 - MIT1002_00739 0.32 +1.0 811,799 - MIT1002_00739 0.32 -0.1 811,810 + MIT1002_00739 0.33 +1.2 811,818 - MIT1002_00739 0.33 +0.2 811,818 - MIT1002_00739 0.33 +0.4 811,818 - MIT1002_00739 0.33 +0.2 811,827 + MIT1002_00739 0.34 +0.7 811,890 - MIT1002_00739 0.39 -0.2 811,914 + MIT1002_00739 0.40 -0.9 811,954 - MIT1002_00739 0.44 -0.7 812,003 + MIT1002_00739 0.47 +0.3 812,004 + MIT1002_00739 0.47 -0.1 812,143 + MIT1002_00739 0.58 -0.7 812,152 - MIT1002_00739 0.59 -0.2 812,241 + MIT1002_00739 0.65 +0.1 812,281 + MIT1002_00739 0.68 -0.3 812,349 + MIT1002_00739 0.74 -1.2 812,372 - MIT1002_00739 0.75 +0.2 812,381 + MIT1002_00739 0.76 +0.2 812,381 + MIT1002_00739 0.76 +0.8 812,389 - MIT1002_00739 0.77 +0.3 812,405 + MIT1002_00739 0.78 +0.0 812,413 + MIT1002_00739 0.78 -0.3 812,472 + MIT1002_00739 0.83 -0.1 812,497 + MIT1002_00739 0.85 -0.1 812,500 + MIT1002_00739 0.85 +0.2 812,541 + MIT1002_00739 0.88 -0.6 812,558 - MIT1002_00739 0.89 -1.4 812,597 + +0.0 812,612 - +0.8 812,612 - -0.7 812,671 - +2.4 812,787 - MIT1002_00740 0.17 -0.7 812,810 - MIT1002_00740 0.20 +2.9 812,844 - MIT1002_00740 0.26 -0.2 812,870 + MIT1002_00740 0.30 -1.8 812,893 + MIT1002_00740 0.34 +0.9 812,893 + MIT1002_00740 0.34 -0.5 812,896 - MIT1002_00740 0.35 -0.7 812,945 - MIT1002_00740 0.43 -0.3 812,952 - MIT1002_00740 0.44 +0.5 813,154 + MIT1002_00740 0.77 -1.3 813,209 - MIT1002_00740 0.87 +0.9 813,409 + +0.2 813,409 + -4.0 813,457 + +1.2 813,499 + +0.2 813,509 + +1.1 813,509 + +0.1
Or see this region's nucleotide sequence