Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00698 and MIT1002_00699 are separated by 36 nucleotides MIT1002_00699 and MIT1002_00700 are separated by 86 nucleotides
MIT1002_00698: MIT1002_00698 - Nitrite reductase [NAD(P)H], at 762,900 to 765,449
_00698
MIT1002_00699: MIT1002_00699 - Nitrite reductase [NAD(P)H] small subunit, at 765,486 to 765,857
_00699
MIT1002_00700: MIT1002_00700 - Nitrate reductase, at 765,944 to 768,853
_00700
Position (kb) 765
766 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 764.487 kb on + strand, within MIT1002_00698 at 764.515 kb on + strand, within MIT1002_00698 at 764.538 kb on + strand, within MIT1002_00698 at 764.553 kb on - strand, within MIT1002_00698 at 764.601 kb on - strand, within MIT1002_00698 at 764.611 kb on - strand, within MIT1002_00698 at 764.721 kb on + strand, within MIT1002_00698 at 764.791 kb on + strand, within MIT1002_00698 at 764.796 kb on + strand, within MIT1002_00698 at 764.868 kb on + strand, within MIT1002_00698 at 764.868 kb on + strand, within MIT1002_00698 at 764.895 kb on + strand, within MIT1002_00698 at 764.904 kb on - strand, within MIT1002_00698 at 764.928 kb on + strand, within MIT1002_00698 at 764.930 kb on + strand, within MIT1002_00698 at 764.936 kb on + strand, within MIT1002_00698 at 764.946 kb on - strand, within MIT1002_00698 at 764.997 kb on + strand, within MIT1002_00698 at 764.998 kb on + strand, within MIT1002_00698 at 765.051 kb on - strand, within MIT1002_00698 at 765.071 kb on - strand, within MIT1002_00698 at 765.148 kb on - strand, within MIT1002_00698 at 765.220 kb on + strand at 765.230 kb on + strand at 765.230 kb on + strand at 765.242 kb on + strand at 765.242 kb on + strand at 765.259 kb on + strand at 765.295 kb on + strand at 765.423 kb on - strand at 765.433 kb on - strand at 765.433 kb on - strand at 765.449 kb on + strand at 765.510 kb on - strand at 765.535 kb on + strand, within MIT1002_00699 at 765.543 kb on - strand, within MIT1002_00699 at 765.588 kb on + strand, within MIT1002_00699 at 765.596 kb on - strand, within MIT1002_00699 at 765.702 kb on + strand, within MIT1002_00699 at 765.744 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.787 kb on - strand, within MIT1002_00699 at 765.817 kb on - strand, within MIT1002_00699 at 765.828 kb on - strand at 765.886 kb on + strand at 765.975 kb on + strand at 765.975 kb on + strand at 766.001 kb on + strand at 766.029 kb on - strand at 766.036 kb on - strand at 766.044 kb on + strand at 766.052 kb on - strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.076 kb on + strand at 766.084 kb on - strand at 766.086 kb on + strand at 766.127 kb on - strand at 766.258 kb on - strand, within MIT1002_00700 at 766.294 kb on + strand, within MIT1002_00700 at 766.307 kb on + strand, within MIT1002_00700 at 766.378 kb on + strand, within MIT1002_00700 at 766.397 kb on + strand, within MIT1002_00700 at 766.402 kb on + strand, within MIT1002_00700 at 766.422 kb on + strand, within MIT1002_00700 at 766.571 kb on + strand, within MIT1002_00700 at 766.635 kb on + strand, within MIT1002_00700 at 766.645 kb on + strand, within MIT1002_00700 at 766.655 kb on + strand, within MIT1002_00700 at 766.673 kb on - strand, within MIT1002_00700 at 766.700 kb on + strand, within MIT1002_00700 at 766.782 kb on + strand, within MIT1002_00700 at 766.822 kb on + strand, within MIT1002_00700
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 764,487 + MIT1002_00698 0.62 +0.4 764,515 + MIT1002_00698 0.63 -0.2 764,538 + MIT1002_00698 0.64 +0.5 764,553 - MIT1002_00698 0.65 +1.6 764,601 - MIT1002_00698 0.67 +1.3 764,611 - MIT1002_00698 0.67 -1.0 764,721 + MIT1002_00698 0.71 -0.2 764,791 + MIT1002_00698 0.74 +0.1 764,796 + MIT1002_00698 0.74 +0.6 764,868 + MIT1002_00698 0.77 +0.9 764,868 + MIT1002_00698 0.77 +1.4 764,895 + MIT1002_00698 0.78 +2.3 764,904 - MIT1002_00698 0.79 -0.0 764,928 + MIT1002_00698 0.80 +0.6 764,930 + MIT1002_00698 0.80 +1.3 764,936 + MIT1002_00698 0.80 +1.6 764,946 - MIT1002_00698 0.80 +3.4 764,997 + MIT1002_00698 0.82 +0.4 764,998 + MIT1002_00698 0.82 +1.0 765,051 - MIT1002_00698 0.84 +2.9 765,071 - MIT1002_00698 0.85 -0.2 765,148 - MIT1002_00698 0.88 -1.2 765,220 + +1.6 765,230 + -0.3 765,230 + +0.1 765,242 + +1.0 765,242 + +0.7 765,259 + +0.7 765,295 + -1.6 765,423 - -0.6 765,433 - -1.8 765,433 - +0.6 765,449 + +1.3 765,510 - +1.6 765,535 + MIT1002_00699 0.13 +1.9 765,543 - MIT1002_00699 0.15 +1.4 765,588 + MIT1002_00699 0.27 +0.4 765,596 - MIT1002_00699 0.30 +0.3 765,702 + MIT1002_00699 0.58 +0.7 765,744 + MIT1002_00699 0.69 +0.4 765,779 + MIT1002_00699 0.79 +0.5 765,779 + MIT1002_00699 0.79 -0.5 765,779 + MIT1002_00699 0.79 +0.7 765,787 - MIT1002_00699 0.81 +0.2 765,817 - MIT1002_00699 0.89 +2.8 765,828 - +0.4 765,886 + +1.0 765,975 + +0.9 765,975 + +0.9 766,001 + +1.0 766,029 - -0.8 766,036 - +1.7 766,044 + +1.7 766,052 - +2.1 766,059 + -0.4 766,059 + -0.4 766,059 + +0.2 766,072 - +1.2 766,072 - +0.7 766,072 - -0.5 766,076 + +0.5 766,084 - +0.4 766,086 + +1.4 766,127 - +0.0 766,258 - MIT1002_00700 0.11 -0.0 766,294 + MIT1002_00700 0.12 +1.2 766,307 + MIT1002_00700 0.12 -0.6 766,378 + MIT1002_00700 0.15 -0.0 766,397 + MIT1002_00700 0.16 -0.8 766,402 + MIT1002_00700 0.16 -0.0 766,422 + MIT1002_00700 0.16 +1.8 766,571 + MIT1002_00700 0.22 -2.4 766,635 + MIT1002_00700 0.24 +0.4 766,645 + MIT1002_00700 0.24 +1.4 766,655 + MIT1002_00700 0.24 +1.1 766,673 - MIT1002_00700 0.25 +0.7 766,700 + MIT1002_00700 0.26 +0.4 766,782 + MIT1002_00700 0.29 -0.8 766,822 + MIT1002_00700 0.30 +1.3
Or see this region's nucleotide sequence