Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00668 and MIT1002_00669 are separated by 210 nucleotides MIT1002_00669 and MIT1002_00670 are separated by 139 nucleotides
MIT1002_00668: MIT1002_00668 - Ion transport protein, at 732,828 to 733,682
_00668
MIT1002_00669: MIT1002_00669 - hypothetical protein, at 733,893 to 734,051
_00669
MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564
_00670
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.896 kb on - strand at 732.916 kb on - strand, within MIT1002_00668 at 732.922 kb on - strand, within MIT1002_00668 at 732.922 kb on - strand, within MIT1002_00668 at 732.933 kb on - strand, within MIT1002_00668 at 733.086 kb on + strand, within MIT1002_00668 at 733.102 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.282 kb on + strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.379 kb on + strand, within MIT1002_00668 at 733.393 kb on + strand, within MIT1002_00668 at 733.496 kb on - strand, within MIT1002_00668 at 733.498 kb on + strand, within MIT1002_00668 at 733.506 kb on - strand, within MIT1002_00668 at 733.629 kb on - strand at 733.667 kb on + strand at 733.690 kb on - strand at 733.721 kb on + strand at 733.938 kb on + strand, within MIT1002_00669 at 733.941 kb on - strand, within MIT1002_00669 at 733.946 kb on - strand, within MIT1002_00669 at 734.056 kb on + strand at 734.077 kb on + strand at 734.079 kb on + strand at 734.128 kb on + strand at 734.133 kb on + strand at 734.183 kb on + strand at 734.310 kb on - strand at 734.351 kb on - strand, within MIT1002_00670 at 734.353 kb on + strand, within MIT1002_00670 at 734.375 kb on - strand, within MIT1002_00670 at 734.800 kb on + strand, within MIT1002_00670 at 734.835 kb on - strand, within MIT1002_00670 at 734.988 kb on - strand, within MIT1002_00670 at 735.030 kb on + strand, within MIT1002_00670
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 732,896 - +1.7 732,916 - MIT1002_00668 0.10 +0.6 732,922 - MIT1002_00668 0.11 +0.7 732,922 - MIT1002_00668 0.11 -0.9 732,933 - MIT1002_00668 0.12 +0.7 733,086 + MIT1002_00668 0.30 -0.3 733,102 + MIT1002_00668 0.32 +0.7 733,215 + MIT1002_00668 0.45 +1.1 733,215 + MIT1002_00668 0.45 +0.4 733,215 + MIT1002_00668 0.45 +0.3 733,215 + MIT1002_00668 0.45 +0.3 733,215 + MIT1002_00668 0.45 -2.8 733,223 - MIT1002_00668 0.46 -0.6 733,223 - MIT1002_00668 0.46 -2.0 733,223 - MIT1002_00668 0.46 +0.1 733,223 - MIT1002_00668 0.46 +0.2 733,223 - MIT1002_00668 0.46 +1.1 733,223 - MIT1002_00668 0.46 +1.8 733,282 + MIT1002_00668 0.53 +0.0 733,290 - MIT1002_00668 0.54 -1.7 733,290 - MIT1002_00668 0.54 +0.9 733,379 + MIT1002_00668 0.64 +0.9 733,393 + MIT1002_00668 0.66 +0.6 733,496 - MIT1002_00668 0.78 +1.0 733,498 + MIT1002_00668 0.78 -0.6 733,506 - MIT1002_00668 0.79 +0.1 733,629 - -0.6 733,667 + -2.1 733,690 - -0.2 733,721 + -2.1 733,938 + MIT1002_00669 0.28 +0.7 733,941 - MIT1002_00669 0.30 -1.3 733,946 - MIT1002_00669 0.33 +1.3 734,056 + +0.7 734,077 + -1.6 734,079 + +0.7 734,128 + +0.7 734,133 + -0.6 734,183 + -0.4 734,310 - +0.7 734,351 - MIT1002_00670 0.12 -1.0 734,353 + MIT1002_00670 0.12 +0.4 734,375 - MIT1002_00670 0.13 +0.7 734,800 + MIT1002_00670 0.44 +0.1 734,835 - MIT1002_00670 0.47 +0.7 734,988 - MIT1002_00670 0.58 +0.1 735,030 + MIT1002_00670 0.61 +0.7
Or see this region's nucleotide sequence