Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00482

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00481 and MIT1002_00482 are separated by 1 nucleotidesMIT1002_00482 and MIT1002_00483 are separated by 4 nucleotides MIT1002_00481: MIT1002_00481 - Macrolide-specific efflux protein MacA precursor, at 525,193 to 526,428 _00481 MIT1002_00482: MIT1002_00482 - Macrolide export ATP-binding/permease protein MacB, at 526,430 to 528,400 _00482 MIT1002_00483: MIT1002_00483 - Outer membrane protein OprM precursor, at 528,405 to 529,814 _00483 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 525.439 kb on - strand, within MIT1002_00481at 525.439 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.458 kb on - strand, within MIT1002_00481at 525.484 kb on - strand, within MIT1002_00481at 525.550 kb on + strand, within MIT1002_00481at 525.553 kb on - strand, within MIT1002_00481at 525.558 kb on - strand, within MIT1002_00481at 525.558 kb on - strand, within MIT1002_00481at 525.568 kb on + strand, within MIT1002_00481at 525.568 kb on + strand, within MIT1002_00481at 525.568 kb on + strand, within MIT1002_00481at 525.576 kb on - strand, within MIT1002_00481at 525.576 kb on - strand, within MIT1002_00481at 525.576 kb on - strand, within MIT1002_00481at 525.581 kb on + strand, within MIT1002_00481at 525.674 kb on + strand, within MIT1002_00481at 525.685 kb on + strand, within MIT1002_00481at 525.686 kb on - strand, within MIT1002_00481at 525.695 kb on + strand, within MIT1002_00481at 525.706 kb on - strand, within MIT1002_00481at 525.745 kb on - strand, within MIT1002_00481at 525.747 kb on + strand, within MIT1002_00481at 525.747 kb on + strand, within MIT1002_00481at 525.747 kb on + strand, within MIT1002_00481at 525.747 kb on + strand, within MIT1002_00481at 525.747 kb on + strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.755 kb on - strand, within MIT1002_00481at 525.797 kb on - strand, within MIT1002_00481at 525.797 kb on - strand, within MIT1002_00481at 525.836 kb on + strand, within MIT1002_00481at 525.844 kb on - strand, within MIT1002_00481at 525.889 kb on - strand, within MIT1002_00481at 525.934 kb on - strand, within MIT1002_00481at 525.944 kb on - strand, within MIT1002_00481at 525.944 kb on - strand, within MIT1002_00481at 525.974 kb on - strand, within MIT1002_00481at 526.066 kb on + strand, within MIT1002_00481at 526.066 kb on + strand, within MIT1002_00481at 526.066 kb on + strand, within MIT1002_00481at 526.074 kb on - strand, within MIT1002_00481at 526.074 kb on - strand, within MIT1002_00481at 526.074 kb on - strand, within MIT1002_00481at 526.155 kb on + strand, within MIT1002_00481at 526.155 kb on + strand, within MIT1002_00481at 526.228 kb on - strand, within MIT1002_00481at 526.232 kb on + strand, within MIT1002_00481at 526.305 kb on + strandat 526.315 kb on + strandat 526.371 kb on - strandat 526.371 kb on - strandat 526.375 kb on + strandat 526.444 kb on + strandat 526.479 kb on + strandat 526.479 kb on + strandat 526.479 kb on + strandat 526.487 kb on - strandat 526.487 kb on - strandat 526.487 kb on - strandat 526.487 kb on - strandat 526.487 kb on - strandat 526.591 kb on - strandat 526.591 kb on - strandat 526.591 kb on - strandat 526.591 kb on - strandat 526.601 kb on - strandat 526.602 kb on + strandat 526.610 kb on - strandat 526.653 kb on + strand, within MIT1002_00482at 526.661 kb on - strand, within MIT1002_00482at 526.663 kb on + strand, within MIT1002_00482at 526.671 kb on - strand, within MIT1002_00482at 526.685 kb on + strand, within MIT1002_00482at 526.765 kb on - strand, within MIT1002_00482at 526.858 kb on + strand, within MIT1002_00482at 526.866 kb on - strand, within MIT1002_00482at 526.869 kb on + strand, within MIT1002_00482at 526.869 kb on + strand, within MIT1002_00482at 526.877 kb on - strand, within MIT1002_00482at 526.877 kb on - strand, within MIT1002_00482at 526.962 kb on + strand, within MIT1002_00482at 526.970 kb on - strand, within MIT1002_00482at 527.003 kb on + strand, within MIT1002_00482at 527.013 kb on + strand, within MIT1002_00482at 527.040 kb on - strand, within MIT1002_00482at 527.061 kb on + strand, within MIT1002_00482at 527.061 kb on + strand, within MIT1002_00482at 527.099 kb on + strand, within MIT1002_00482at 527.122 kb on + strand, within MIT1002_00482at 527.132 kb on + strand, within MIT1002_00482at 527.140 kb on - strand, within MIT1002_00482at 527.189 kb on - strand, within MIT1002_00482at 527.189 kb on - strand, within MIT1002_00482at 527.193 kb on + strand, within MIT1002_00482at 527.239 kb on + strand, within MIT1002_00482at 527.252 kb on - strand, within MIT1002_00482at 527.357 kb on + strand, within MIT1002_00482at 527.357 kb on + strand, within MIT1002_00482at 527.361 kb on - strand, within MIT1002_00482at 527.403 kb on + strand, within MIT1002_00482at 527.427 kb on + strand, within MIT1002_00482at 527.478 kb on - strand, within MIT1002_00482at 527.485 kb on + strand, within MIT1002_00482at 527.499 kb on - strand, within MIT1002_00482at 527.499 kb on - strand, within MIT1002_00482at 527.514 kb on + strand, within MIT1002_00482at 527.638 kb on - strand, within MIT1002_00482at 527.760 kb on - strand, within MIT1002_00482at 527.789 kb on - strand, within MIT1002_00482at 527.824 kb on + strand, within MIT1002_00482at 527.832 kb on - strand, within MIT1002_00482at 527.884 kb on + strand, within MIT1002_00482at 527.892 kb on + strand, within MIT1002_00482at 527.987 kb on + strand, within MIT1002_00482at 528.008 kb on + strand, within MIT1002_00482at 528.169 kb on - strand, within MIT1002_00482at 528.192 kb on - strand, within MIT1002_00482at 528.202 kb on - strand, within MIT1002_00482at 528.209 kb on + strandat 528.254 kb on + strandat 528.282 kb on + strandat 528.359 kb on + strandat 528.375 kb on - strandat 528.383 kb on - strandat 528.394 kb on + strandat 528.395 kb on + strandat 528.395 kb on + strandat 528.442 kb on + strandat 528.452 kb on - strandat 528.466 kb on + strandat 528.469 kb on - strandat 528.469 kb on - strandat 528.469 kb on - strandat 528.474 kb on - strandat 528.601 kb on - strand, within MIT1002_00483at 528.660 kb on + strand, within MIT1002_00483at 528.668 kb on - strand, within MIT1002_00483at 528.679 kb on - strand, within MIT1002_00483at 528.692 kb on - strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.739 kb on + strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.747 kb on - strand, within MIT1002_00483at 528.749 kb on + strand, within MIT1002_00483at 528.749 kb on + strand, within MIT1002_00483at 528.759 kb on + strand, within MIT1002_00483at 528.767 kb on - strand, within MIT1002_00483at 528.767 kb on - strand, within MIT1002_00483at 528.789 kb on + strand, within MIT1002_00483at 528.811 kb on + strand, within MIT1002_00483at 528.819 kb on - strand, within MIT1002_00483at 528.822 kb on + strand, within MIT1002_00483at 528.824 kb on + strand, within MIT1002_00483at 528.830 kb on - strand, within MIT1002_00483at 528.832 kb on - strand, within MIT1002_00483at 528.859 kb on - strand, within MIT1002_00483at 528.874 kb on + strand, within MIT1002_00483at 528.882 kb on - strand, within MIT1002_00483at 528.905 kb on + strand, within MIT1002_00483at 528.913 kb on + strand, within MIT1002_00483at 528.955 kb on - strand, within MIT1002_00483at 528.976 kb on - strand, within MIT1002_00483at 528.987 kb on + strand, within MIT1002_00483at 528.988 kb on - strand, within MIT1002_00483at 529.000 kb on - strand, within MIT1002_00483at 529.051 kb on + strand, within MIT1002_00483at 529.077 kb on + strand, within MIT1002_00483at 529.095 kb on - strand, within MIT1002_00483at 529.101 kb on - strand, within MIT1002_00483at 529.120 kb on + strand, within MIT1002_00483at 529.126 kb on + strand, within MIT1002_00483at 529.159 kb on - strand, within MIT1002_00483at 529.183 kb on + strand, within MIT1002_00483at 529.240 kb on - strand, within MIT1002_00483at 529.253 kb on - strand, within MIT1002_00483at 529.256 kb on - strand, within MIT1002_00483at 529.282 kb on - strand, within MIT1002_00483at 529.289 kb on + strand, within MIT1002_00483

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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525,439 - MIT1002_00481 0.20 -0.5
525,439 - MIT1002_00481 0.20 -1.5
525,458 - MIT1002_00481 0.21 +0.5
525,458 - MIT1002_00481 0.21 -0.6
525,458 - MIT1002_00481 0.21 +0.1
525,458 - MIT1002_00481 0.21 +0.9
525,484 - MIT1002_00481 0.24 +0.6
525,550 + MIT1002_00481 0.29 +0.6
525,553 - MIT1002_00481 0.29 -0.4
525,558 - MIT1002_00481 0.30 -0.5
525,558 - MIT1002_00481 0.30 -0.7
525,568 + MIT1002_00481 0.30 -2.4
525,568 + MIT1002_00481 0.30 +0.1
525,568 + MIT1002_00481 0.30 -0.3
525,576 - MIT1002_00481 0.31 -0.7
525,576 - MIT1002_00481 0.31 -3.7
525,576 - MIT1002_00481 0.31 -0.8
525,581 + MIT1002_00481 0.31 +0.3
525,674 + MIT1002_00481 0.39 -0.8
525,685 + MIT1002_00481 0.40 -0.6
525,686 - MIT1002_00481 0.40 -2.5
525,695 + MIT1002_00481 0.41 +0.0
525,706 - MIT1002_00481 0.42 -1.0
525,745 - MIT1002_00481 0.45 -1.0
525,747 + MIT1002_00481 0.45 +1.1
525,747 + MIT1002_00481 0.45 +0.1
525,747 + MIT1002_00481 0.45 -0.5
525,747 + MIT1002_00481 0.45 -0.5
525,747 + MIT1002_00481 0.45 -0.2
525,755 - MIT1002_00481 0.45 -2.3
525,755 - MIT1002_00481 0.45 +0.0
525,755 - MIT1002_00481 0.45 -1.0
525,755 - MIT1002_00481 0.45 -1.3
525,755 - MIT1002_00481 0.45 -0.8
525,755 - MIT1002_00481 0.45 -0.4
525,797 - MIT1002_00481 0.49 -0.8
525,797 - MIT1002_00481 0.49 -0.1
525,836 + MIT1002_00481 0.52 -0.6
525,844 - MIT1002_00481 0.53 -0.5
525,889 - MIT1002_00481 0.56 -0.9
525,934 - MIT1002_00481 0.60 +1.6
525,944 - MIT1002_00481 0.61 +0.1
525,944 - MIT1002_00481 0.61 -0.3
525,974 - MIT1002_00481 0.63 -0.5
526,066 + MIT1002_00481 0.71 +0.0
526,066 + MIT1002_00481 0.71 +0.6
526,066 + MIT1002_00481 0.71 -0.4
526,074 - MIT1002_00481 0.71 -1.0
526,074 - MIT1002_00481 0.71 +1.1
526,074 - MIT1002_00481 0.71 -0.6
526,155 + MIT1002_00481 0.78 +0.5
526,155 + MIT1002_00481 0.78 -0.3
526,228 - MIT1002_00481 0.84 -1.5
526,232 + MIT1002_00481 0.84 -1.5
526,305 + +1.3
526,315 + -2.4
526,371 - -0.7
526,371 - -1.4
526,375 + +0.0
526,444 + +0.1
526,479 + -0.5
526,479 + +1.0
526,479 + -1.2
526,487 - +0.2
526,487 - +1.1
526,487 - -1.3
526,487 - +0.7
526,487 - -0.5
526,591 - -0.1
526,591 - -1.0
526,591 - -0.2
526,591 - -2.7
526,601 - -0.0
526,602 + +1.9
526,610 - -0.5
526,653 + MIT1002_00482 0.11 +1.1
526,661 - MIT1002_00482 0.12 -1.1
526,663 + MIT1002_00482 0.12 -1.7
526,671 - MIT1002_00482 0.12 -0.3
526,685 + MIT1002_00482 0.13 +1.0
526,765 - MIT1002_00482 0.17 -0.6
526,858 + MIT1002_00482 0.22 -0.8
526,866 - MIT1002_00482 0.22 +3.2
526,869 + MIT1002_00482 0.22 -0.2
526,869 + MIT1002_00482 0.22 -1.1
526,877 - MIT1002_00482 0.23 -0.0
526,877 - MIT1002_00482 0.23 -0.8
526,962 + MIT1002_00482 0.27 +2.2
526,970 - MIT1002_00482 0.27 +0.0
527,003 + MIT1002_00482 0.29 +0.3
527,013 + MIT1002_00482 0.30 +1.0
527,040 - MIT1002_00482 0.31 -0.9
527,061 + MIT1002_00482 0.32 -0.0
527,061 + MIT1002_00482 0.32 +0.3
527,099 + MIT1002_00482 0.34 +0.5
527,122 + MIT1002_00482 0.35 +0.5
527,132 + MIT1002_00482 0.36 -0.5
527,140 - MIT1002_00482 0.36 +0.4
527,189 - MIT1002_00482 0.39 +1.1
527,189 - MIT1002_00482 0.39 -0.1
527,193 + MIT1002_00482 0.39 -0.2
527,239 + MIT1002_00482 0.41 -1.7
527,252 - MIT1002_00482 0.42 +1.3
527,357 + MIT1002_00482 0.47 -0.1
527,357 + MIT1002_00482 0.47 +1.4
527,361 - MIT1002_00482 0.47 -0.8
527,403 + MIT1002_00482 0.49 -0.1
527,427 + MIT1002_00482 0.51 +0.4
527,478 - MIT1002_00482 0.53 +0.9
527,485 + MIT1002_00482 0.54 -2.2
527,499 - MIT1002_00482 0.54 +2.3
527,499 - MIT1002_00482 0.54 +1.3
527,514 + MIT1002_00482 0.55 +0.3
527,638 - MIT1002_00482 0.61 -1.5
527,760 - MIT1002_00482 0.67 +0.4
527,789 - MIT1002_00482 0.69 +0.5
527,824 + MIT1002_00482 0.71 -3.0
527,832 - MIT1002_00482 0.71 -0.3
527,884 + MIT1002_00482 0.74 +0.6
527,892 + MIT1002_00482 0.74 -0.4
527,987 + MIT1002_00482 0.79 -0.5
528,008 + MIT1002_00482 0.80 -0.8
528,169 - MIT1002_00482 0.88 +0.7
528,192 - MIT1002_00482 0.89 -0.9
528,202 - MIT1002_00482 0.90 -1.1
528,209 + -0.5
528,254 + +0.8
528,282 + -0.4
528,359 + +2.0
528,375 - +1.0
528,383 - +0.5
528,394 + +0.7
528,395 + +0.3
528,395 + +0.1
528,442 + +0.1
528,452 - +1.3
528,466 + -0.1
528,469 - -0.3
528,469 - +0.2
528,469 - +2.8
528,474 - +1.1
528,601 - MIT1002_00483 0.14 -0.1
528,660 + MIT1002_00483 0.18 -0.5
528,668 - MIT1002_00483 0.19 -0.2
528,679 - MIT1002_00483 0.19 -0.3
528,692 - MIT1002_00483 0.20 -1.5
528,739 + MIT1002_00483 0.24 -1.6
528,739 + MIT1002_00483 0.24 -2.1
528,739 + MIT1002_00483 0.24 -1.2
528,747 - MIT1002_00483 0.24 +0.5
528,747 - MIT1002_00483 0.24 -0.6
528,747 - MIT1002_00483 0.24 -2.3
528,747 - MIT1002_00483 0.24 -0.3
528,747 - MIT1002_00483 0.24 -1.3
528,749 + MIT1002_00483 0.24 +0.3
528,749 + MIT1002_00483 0.24 -1.3
528,759 + MIT1002_00483 0.25 -1.0
528,767 - MIT1002_00483 0.26 -0.6
528,767 - MIT1002_00483 0.26 -1.3
528,789 + MIT1002_00483 0.27 +1.0
528,811 + MIT1002_00483 0.29 +0.1
528,819 - MIT1002_00483 0.29 +1.3
528,822 + MIT1002_00483 0.30 +0.0
528,824 + MIT1002_00483 0.30 -0.5
528,830 - MIT1002_00483 0.30 +0.7
528,832 - MIT1002_00483 0.30 -0.9
528,859 - MIT1002_00483 0.32 +1.1
528,874 + MIT1002_00483 0.33 -1.4
528,882 - MIT1002_00483 0.34 +0.7
528,905 + MIT1002_00483 0.35 -0.8
528,913 + MIT1002_00483 0.36 -0.1
528,955 - MIT1002_00483 0.39 -0.6
528,976 - MIT1002_00483 0.40 -1.0
528,987 + MIT1002_00483 0.41 +0.3
528,988 - MIT1002_00483 0.41 +0.8
529,000 - MIT1002_00483 0.42 +0.2
529,051 + MIT1002_00483 0.46 +1.7
529,077 + MIT1002_00483 0.48 -2.1
529,095 - MIT1002_00483 0.49 -0.2
529,101 - MIT1002_00483 0.49 +0.1
529,120 + MIT1002_00483 0.51 -0.0
529,126 + MIT1002_00483 0.51 +0.5
529,159 - MIT1002_00483 0.53 +0.6
529,183 + MIT1002_00483 0.55 +1.0
529,240 - MIT1002_00483 0.59 +1.6
529,253 - MIT1002_00483 0.60 +0.3
529,256 - MIT1002_00483 0.60 +0.3
529,282 - MIT1002_00483 0.62 -0.4
529,289 + MIT1002_00483 0.63 -0.3

Or see this region's nucleotide sequence