Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00476

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00475 and MIT1002_00476 are separated by 54 nucleotidesMIT1002_00476 and MIT1002_00477 are separated by 211 nucleotidesMIT1002_00477 and MIT1002_00478 overlap by 1 nucleotides MIT1002_00475: MIT1002_00475 - hypothetical protein, at 518,898 to 520,151 _00475 MIT1002_00476: MIT1002_00476 - periplasmic repressor CpxP, at 520,206 to 521,087 _00476 MIT1002_00477: MIT1002_00477 - Response regulator ArlR, at 521,299 to 522,057 _00477 MIT1002_00478: MIT1002_00478 - Sensor protein CpxA, at 522,057 to 523,418 _00478 Position (kb) 520 521 522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 519.225 kb on - strand, within MIT1002_00475at 519.227 kb on - strand, within MIT1002_00475at 519.230 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.250 kb on - strand, within MIT1002_00475at 519.254 kb on + strand, within MIT1002_00475at 519.326 kb on - strand, within MIT1002_00475at 519.386 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.542 kb on - strand, within MIT1002_00475at 519.615 kb on - strand, within MIT1002_00475at 519.700 kb on - strand, within MIT1002_00475at 519.720 kb on - strand, within MIT1002_00475at 519.737 kb on + strand, within MIT1002_00475at 519.762 kb on + strand, within MIT1002_00475at 519.777 kb on + strand, within MIT1002_00475at 519.779 kb on + strand, within MIT1002_00475at 519.785 kb on - strand, within MIT1002_00475at 519.801 kb on - strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.884 kb on - strand, within MIT1002_00475at 519.885 kb on - strand, within MIT1002_00475at 520.053 kb on + strandat 520.053 kb on + strandat 520.061 kb on - strandat 520.089 kb on + strandat 520.114 kb on + strandat 520.185 kb on + strandat 520.187 kb on + strandat 520.195 kb on - strandat 520.204 kb on - strandat 520.229 kb on + strandat 520.271 kb on + strandat 520.271 kb on + strandat 520.271 kb on + strandat 520.278 kb on + strandat 520.279 kb on - strandat 520.279 kb on - strandat 520.297 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.364 kb on + strand, within MIT1002_00476at 520.401 kb on - strand, within MIT1002_00476at 520.412 kb on + strand, within MIT1002_00476at 520.418 kb on + strand, within MIT1002_00476at 520.425 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.527 kb on - strand, within MIT1002_00476at 520.531 kb on + strand, within MIT1002_00476at 520.560 kb on + strand, within MIT1002_00476at 520.617 kb on - strand, within MIT1002_00476at 520.724 kb on + strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.808 kb on + strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.918 kb on + strand, within MIT1002_00476at 520.937 kb on + strand, within MIT1002_00476at 520.951 kb on + strand, within MIT1002_00476at 520.952 kb on - strand, within MIT1002_00476at 521.049 kb on - strandat 521.112 kb on + strandat 521.112 kb on + strandat 521.120 kb on - strandat 521.120 kb on - strandat 521.153 kb on + strandat 521.153 kb on + strandat 521.161 kb on - strandat 521.196 kb on + strandat 521.199 kb on - strandat 521.317 kb on + strandat 521.324 kb on + strandat 521.332 kb on - strandat 521.334 kb on + strandat 521.390 kb on + strand, within MIT1002_00477at 521.399 kb on - strand, within MIT1002_00477at 521.399 kb on - strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.414 kb on + strand, within MIT1002_00477at 521.427 kb on + strand, within MIT1002_00477at 521.433 kb on + strand, within MIT1002_00477at 521.449 kb on + strand, within MIT1002_00477at 521.451 kb on - strand, within MIT1002_00477at 521.451 kb on - strand, within MIT1002_00477at 521.465 kb on - strand, within MIT1002_00477at 521.470 kb on + strand, within MIT1002_00477at 521.472 kb on - strand, within MIT1002_00477at 521.490 kb on - strand, within MIT1002_00477at 521.622 kb on - strand, within MIT1002_00477at 521.668 kb on + strand, within MIT1002_00477at 521.677 kb on - strand, within MIT1002_00477at 521.837 kb on - strand, within MIT1002_00477at 521.839 kb on - strand, within MIT1002_00477at 521.870 kb on + strand, within MIT1002_00477at 521.903 kb on + strand, within MIT1002_00477at 521.904 kb on - strand, within MIT1002_00477at 522.014 kb on - strandat 522.018 kb on + strandat 522.074 kb on - strandat 522.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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519,225 - MIT1002_00475 0.26 -1.5
519,227 - MIT1002_00475 0.26 +1.3
519,230 + MIT1002_00475 0.26 -0.9
519,242 + MIT1002_00475 0.27 +0.2
519,242 + MIT1002_00475 0.27 -4.2
519,250 - MIT1002_00475 0.28 -0.0
519,254 + MIT1002_00475 0.28 +1.0
519,326 - MIT1002_00475 0.34 +0.5
519,386 + MIT1002_00475 0.39 +0.0
519,514 + MIT1002_00475 0.49 -2.5
519,514 + MIT1002_00475 0.49 +0.5
519,542 - MIT1002_00475 0.51 -1.1
519,615 - MIT1002_00475 0.57 -2.9
519,700 - MIT1002_00475 0.64 +0.3
519,720 - MIT1002_00475 0.66 +0.8
519,737 + MIT1002_00475 0.67 +0.6
519,762 + MIT1002_00475 0.69 +0.4
519,777 + MIT1002_00475 0.70 +0.4
519,779 + MIT1002_00475 0.70 +0.5
519,785 - MIT1002_00475 0.71 -2.1
519,801 - MIT1002_00475 0.72 -1.0
519,819 + MIT1002_00475 0.73 -0.1
519,819 + MIT1002_00475 0.73 +0.6
519,884 - MIT1002_00475 0.79 -1.0
519,885 - MIT1002_00475 0.79 -0.5
520,053 + +2.0
520,053 + +0.9
520,061 - +1.9
520,089 + -0.5
520,114 + +0.2
520,185 + -0.3
520,187 + -0.5
520,195 - +0.4
520,204 - -0.6
520,229 + +1.0
520,271 + -0.5
520,271 + -0.7
520,271 + -1.4
520,278 + +0.4
520,279 - +0.5
520,279 - +0.5
520,297 + MIT1002_00476 0.10 -0.2
520,342 + MIT1002_00476 0.15 -1.8
520,342 + MIT1002_00476 0.15 -1.1
520,342 + MIT1002_00476 0.15 -2.0
520,342 + MIT1002_00476 0.15 +0.6
520,350 - MIT1002_00476 0.16 -0.3
520,350 - MIT1002_00476 0.16 +1.5
520,350 - MIT1002_00476 0.16 -0.2
520,364 + MIT1002_00476 0.18 -0.1
520,401 - MIT1002_00476 0.22 -1.7
520,412 + MIT1002_00476 0.23 +2.7
520,418 + MIT1002_00476 0.24 -0.2
520,425 - MIT1002_00476 0.25 +0.2
520,426 - MIT1002_00476 0.25 +0.8
520,426 - MIT1002_00476 0.25 -2.1
520,426 - MIT1002_00476 0.25 -0.0
520,511 + MIT1002_00476 0.35 -0.6
520,511 + MIT1002_00476 0.35 -0.2
520,511 + MIT1002_00476 0.35 +0.7
520,519 - MIT1002_00476 0.35 +0.4
520,519 - MIT1002_00476 0.35 +0.8
520,519 - MIT1002_00476 0.35 +0.7
520,527 - MIT1002_00476 0.36 -0.2
520,531 + MIT1002_00476 0.37 -0.1
520,560 + MIT1002_00476 0.40 -0.5
520,617 - MIT1002_00476 0.47 -0.9
520,724 + MIT1002_00476 0.59 -2.3
520,732 - MIT1002_00476 0.60 -0.4
520,732 - MIT1002_00476 0.60 +0.2
520,808 + MIT1002_00476 0.68 +0.3
520,816 - MIT1002_00476 0.69 -0.2
520,816 - MIT1002_00476 0.69 -0.5
520,816 - MIT1002_00476 0.69 +0.6
520,816 - MIT1002_00476 0.69 +0.6
520,918 + MIT1002_00476 0.81 -2.0
520,937 + MIT1002_00476 0.83 +0.6
520,951 + MIT1002_00476 0.84 -0.0
520,952 - MIT1002_00476 0.85 -0.7
521,049 - -0.2
521,112 + +0.4
521,112 + +1.3
521,120 - +0.3
521,120 - +0.0
521,153 + -1.3
521,153 + +0.9
521,161 - -0.9
521,196 + +0.9
521,199 - +0.4
521,317 + -0.4
521,324 + -0.7
521,332 - -1.7
521,334 + +1.8
521,390 + MIT1002_00477 0.12 -0.5
521,399 - MIT1002_00477 0.13 -1.5
521,399 - MIT1002_00477 0.13 -0.6
521,414 + MIT1002_00477 0.15 -0.4
521,414 + MIT1002_00477 0.15 -0.2
521,414 + MIT1002_00477 0.15 +0.5
521,414 + MIT1002_00477 0.15 -0.4
521,427 + MIT1002_00477 0.17 -0.8
521,433 + MIT1002_00477 0.18 +0.4
521,449 + MIT1002_00477 0.20 +0.5
521,451 - MIT1002_00477 0.20 -2.0
521,451 - MIT1002_00477 0.20 +1.7
521,465 - MIT1002_00477 0.22 -1.3
521,470 + MIT1002_00477 0.23 -1.0
521,472 - MIT1002_00477 0.23 -1.4
521,490 - MIT1002_00477 0.25 -1.7
521,622 - MIT1002_00477 0.43 -2.1
521,668 + MIT1002_00477 0.49 +1.6
521,677 - MIT1002_00477 0.50 -0.5
521,837 - MIT1002_00477 0.71 -2.2
521,839 - MIT1002_00477 0.71 -1.8
521,870 + MIT1002_00477 0.75 +0.0
521,903 + MIT1002_00477 0.80 -0.7
521,904 - MIT1002_00477 0.80 -0.5
522,014 - -0.9
522,018 + +1.1
522,074 - -0.9
522,082 + +0.8

Or see this region's nucleotide sequence