Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00432

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00431 and MIT1002_00432 are separated by 63 nucleotidesMIT1002_00432 and MIT1002_00433 are separated by 12 nucleotides MIT1002_00431: MIT1002_00431 - DNA topoisomerase 4 subunit A, at 469,678 to 471,963 _00431 MIT1002_00432: MIT1002_00432 - Heme NO binding protein, at 472,027 to 472,563 _00432 MIT1002_00433: MIT1002_00433 - Cyclic di-GMP phosphodiesterase Gmr, at 472,576 to 474,744 _00433 Position (kb) 472 473Strain fitness (log2 ratio) -2 -1 0 1at 472.257 kb on + strand, within MIT1002_00432at 472.257 kb on + strand, within MIT1002_00432at 472.257 kb on + strand, within MIT1002_00432at 472.265 kb on - strand, within MIT1002_00432at 472.267 kb on + strand, within MIT1002_00432at 472.284 kb on + strand, within MIT1002_00432at 472.287 kb on - strand, within MIT1002_00432at 472.287 kb on - strand, within MIT1002_00432at 472.353 kb on + strand, within MIT1002_00432at 472.353 kb on + strand, within MIT1002_00432at 472.361 kb on - strand, within MIT1002_00432at 472.382 kb on - strand, within MIT1002_00432at 472.392 kb on + strand, within MIT1002_00432at 472.400 kb on - strand, within MIT1002_00432at 472.409 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.483 kb on + strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.536 kb on - strandat 472.536 kb on - strandat 472.536 kb on - strandat 472.586 kb on + strandat 472.586 kb on + strandat 472.638 kb on - strandat 472.679 kb on - strandat 472.808 kb on - strand, within MIT1002_00433at 472.846 kb on + strand, within MIT1002_00433at 472.846 kb on + strand, within MIT1002_00433at 472.864 kb on - strand, within MIT1002_00433at 472.873 kb on - strand, within MIT1002_00433at 472.876 kb on - strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.036 kb on - strand, within MIT1002_00433at 473.088 kb on + strand, within MIT1002_00433at 473.111 kb on + strand, within MIT1002_00433at 473.162 kb on + strand, within MIT1002_00433at 473.227 kb on + strand, within MIT1002_00433at 473.482 kb on + strand, within MIT1002_00433at 473.522 kb on - strand, within MIT1002_00433at 473.528 kb on - strand, within MIT1002_00433

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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472,257 + MIT1002_00432 0.43 -0.3
472,257 + MIT1002_00432 0.43 -0.6
472,257 + MIT1002_00432 0.43 +0.4
472,265 - MIT1002_00432 0.44 +0.2
472,267 + MIT1002_00432 0.45 +0.4
472,284 + MIT1002_00432 0.48 +0.8
472,287 - MIT1002_00432 0.48 +0.0
472,287 - MIT1002_00432 0.48 -0.3
472,353 + MIT1002_00432 0.61 +1.0
472,353 + MIT1002_00432 0.61 +0.2
472,361 - MIT1002_00432 0.62 -0.1
472,382 - MIT1002_00432 0.66 -0.3
472,392 + MIT1002_00432 0.68 +0.4
472,400 - MIT1002_00432 0.69 +0.2
472,409 - MIT1002_00432 0.71 -1.0
472,430 - MIT1002_00432 0.75 +0.8
472,430 - MIT1002_00432 0.75 -0.7
472,430 - MIT1002_00432 0.75 -1.3
472,467 - MIT1002_00432 0.82 -0.2
472,467 - MIT1002_00432 0.82 +0.3
472,467 - MIT1002_00432 0.82 -0.4
472,483 + MIT1002_00432 0.85 -0.1
472,491 - MIT1002_00432 0.86 -0.8
472,491 - MIT1002_00432 0.86 -0.7
472,491 - MIT1002_00432 0.86 -1.8
472,536 - -1.3
472,536 - -0.3
472,536 - -0.3
472,586 + +0.7
472,586 + -0.9
472,638 - -0.1
472,679 - -0.5
472,808 - MIT1002_00433 0.11 -0.1
472,846 + MIT1002_00433 0.12 -0.0
472,846 + MIT1002_00433 0.12 +0.2
472,864 - MIT1002_00433 0.13 +0.1
472,873 - MIT1002_00433 0.14 +0.9
472,876 - MIT1002_00433 0.14 -0.3
473,000 + MIT1002_00433 0.20 +0.3
473,000 + MIT1002_00433 0.20 -0.5
473,000 + MIT1002_00433 0.20 +0.2
473,000 + MIT1002_00433 0.20 -0.3
473,000 + MIT1002_00433 0.20 +0.1
473,000 + MIT1002_00433 0.20 -2.3
473,000 + MIT1002_00433 0.20 -1.5
473,008 - MIT1002_00433 0.20 -0.6
473,008 - MIT1002_00433 0.20 -0.8
473,008 - MIT1002_00433 0.20 -0.0
473,008 - MIT1002_00433 0.20 -1.2
473,008 - MIT1002_00433 0.20 -0.3
473,008 - MIT1002_00433 0.20 -1.2
473,036 - MIT1002_00433 0.21 -0.3
473,088 + MIT1002_00433 0.24 +0.9
473,111 + MIT1002_00433 0.25 +0.4
473,162 + MIT1002_00433 0.27 -0.5
473,227 + MIT1002_00433 0.30 -1.4
473,482 + MIT1002_00433 0.42 +0.2
473,522 - MIT1002_00433 0.44 +0.4
473,528 - MIT1002_00433 0.44 +0.7

Or see this region's nucleotide sequence