Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00418

Experiment: monoculture; Experiment A, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00417 and MIT1002_00418 are separated by 167 nucleotidesMIT1002_00418 and MIT1002_00419 are separated by 167 nucleotides MIT1002_00417: MIT1002_00417 - Ammonia transporter, at 449,467 to 450,714 _00417 MIT1002_00418: MIT1002_00418 - hypothetical protein, at 450,882 to 452,210 _00418 MIT1002_00419: MIT1002_00419 - Putative gamma-glutamyltransferase YwrD, at 452,378 to 454,069 _00419 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2 3at 449.889 kb on - strand, within MIT1002_00417at 449.905 kb on + strand, within MIT1002_00417at 449.940 kb on + strand, within MIT1002_00417at 449.948 kb on - strand, within MIT1002_00417at 449.989 kb on + strand, within MIT1002_00417at 450.031 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.074 kb on - strand, within MIT1002_00417at 450.102 kb on - strand, within MIT1002_00417at 450.127 kb on - strand, within MIT1002_00417at 450.140 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.263 kb on - strand, within MIT1002_00417at 450.297 kb on - strand, within MIT1002_00417at 450.298 kb on - strand, within MIT1002_00417at 450.303 kb on + strand, within MIT1002_00417at 450.311 kb on - strand, within MIT1002_00417at 450.353 kb on - strand, within MIT1002_00417at 450.354 kb on + strand, within MIT1002_00417at 450.362 kb on - strand, within MIT1002_00417at 450.376 kb on - strand, within MIT1002_00417at 450.421 kb on + strand, within MIT1002_00417at 450.432 kb on + strand, within MIT1002_00417at 450.491 kb on + strand, within MIT1002_00417at 450.498 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.584 kb on + strand, within MIT1002_00417at 450.618 kb on + strandat 450.620 kb on + strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.668 kb on + strandat 450.693 kb on - strandat 450.709 kb on + strandat 450.798 kb on - strandat 452.214 kb on + strandat 452.275 kb on - strandat 452.300 kb on - strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.317 kb on - strandat 452.388 kb on - strandat 452.390 kb on - strandat 452.431 kb on - strandat 452.446 kb on - strandat 452.483 kb on - strandat 452.547 kb on + strandat 452.573 kb on - strand, within MIT1002_00419at 452.612 kb on - strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.706 kb on + strand, within MIT1002_00419at 452.788 kb on + strand, within MIT1002_00419at 452.806 kb on - strand, within MIT1002_00419at 452.808 kb on + strand, within MIT1002_00419at 452.839 kb on + strand, within MIT1002_00419at 452.844 kb on + strand, within MIT1002_00419at 452.845 kb on - strand, within MIT1002_00419at 452.847 kb on - strand, within MIT1002_00419at 452.854 kb on + strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.909 kb on + strand, within MIT1002_00419at 453.024 kb on - strand, within MIT1002_00419at 453.188 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
remove
449,889 - MIT1002_00417 0.34 -0.5
449,905 + MIT1002_00417 0.35 +0.1
449,940 + MIT1002_00417 0.38 -0.1
449,948 - MIT1002_00417 0.39 -0.5
449,989 + MIT1002_00417 0.42 +0.0
450,031 - MIT1002_00417 0.45 +0.0
450,057 - MIT1002_00417 0.47 +1.4
450,057 - MIT1002_00417 0.47 +0.1
450,074 - MIT1002_00417 0.49 +0.5
450,102 - MIT1002_00417 0.51 +2.3
450,127 - MIT1002_00417 0.53 +0.2
450,140 + MIT1002_00417 0.54 +0.0
450,158 + MIT1002_00417 0.55 +0.6
450,158 + MIT1002_00417 0.55 +0.2
450,163 + MIT1002_00417 0.56 +0.7
450,163 + MIT1002_00417 0.56 +0.9
450,163 + MIT1002_00417 0.56 -0.1
450,163 + MIT1002_00417 0.56 -1.1
450,171 - MIT1002_00417 0.56 -2.5
450,171 - MIT1002_00417 0.56 -1.2
450,171 - MIT1002_00417 0.56 +0.2
450,171 - MIT1002_00417 0.56 -0.8
450,263 - MIT1002_00417 0.64 +0.2
450,297 - MIT1002_00417 0.67 +0.4
450,298 - MIT1002_00417 0.67 +0.2
450,303 + MIT1002_00417 0.67 +0.3
450,311 - MIT1002_00417 0.68 -0.9
450,353 - MIT1002_00417 0.71 -0.9
450,354 + MIT1002_00417 0.71 -2.3
450,362 - MIT1002_00417 0.72 +0.2
450,376 - MIT1002_00417 0.73 -0.1
450,421 + MIT1002_00417 0.76 -0.1
450,432 + MIT1002_00417 0.77 +0.0
450,491 + MIT1002_00417 0.82 -0.3
450,498 - MIT1002_00417 0.83 -0.2
450,499 - MIT1002_00417 0.83 -0.8
450,499 - MIT1002_00417 0.83 -1.8
450,499 - MIT1002_00417 0.83 -0.6
450,584 + MIT1002_00417 0.90 -0.5
450,618 + +2.9
450,620 + +1.4
450,628 - -2.0
450,628 - -1.0
450,628 - -2.1
450,628 - -0.8
450,653 + -0.0
450,653 + -0.6
450,653 + +1.2
450,661 - +2.3
450,661 - +0.2
450,661 - +1.1
450,661 - +0.7
450,668 + +1.6
450,693 - +0.2
450,709 + -0.3
450,798 - -1.1
452,214 + +0.0
452,275 - -2.1
452,300 - -1.7
452,309 + -0.9
452,309 + -0.4
452,317 - -0.9
452,388 - -2.3
452,390 - +2.3
452,431 - +1.6
452,446 - -1.8
452,483 - -2.5
452,547 + -1.0
452,573 - MIT1002_00419 0.12 +1.0
452,612 - MIT1002_00419 0.14 -0.1
452,685 + MIT1002_00419 0.18 -0.2
452,685 + MIT1002_00419 0.18 -0.6
452,685 + MIT1002_00419 0.18 +0.5
452,706 + MIT1002_00419 0.19 -0.9
452,788 + MIT1002_00419 0.24 -0.3
452,806 - MIT1002_00419 0.25 +1.0
452,808 + MIT1002_00419 0.25 +0.9
452,839 + MIT1002_00419 0.27 -0.3
452,844 + MIT1002_00419 0.28 +0.5
452,845 - MIT1002_00419 0.28 -0.8
452,847 - MIT1002_00419 0.28 +0.4
452,854 + MIT1002_00419 0.28 +0.4
452,862 - MIT1002_00419 0.29 -0.1
452,862 - MIT1002_00419 0.29 -0.4
452,909 + MIT1002_00419 0.31 +1.0
453,024 - MIT1002_00419 0.38 +2.2
453,188 - MIT1002_00419 0.48 +0.6
453,203 - MIT1002_00419 0.49 +0.5
453,203 - MIT1002_00419 0.49 +0.2
453,203 - MIT1002_00419 0.49 +1.0

Or see this region's nucleotide sequence