Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00219

Experiment: monoculture; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00217 and MIT1002_00218 overlap by 11 nucleotidesMIT1002_00218 and MIT1002_00219 overlap by 1 nucleotidesMIT1002_00219 and MIT1002_00220 are separated by 355 nucleotides MIT1002_00217: MIT1002_00217 - hypothetical protein, at 238,523 to 239,266 _00217 MIT1002_00218: MIT1002_00218 - hypothetical protein, at 239,256 to 239,747 _00218 MIT1002_00219: MIT1002_00219 - H-type lectin domain protein, at 239,747 to 243,445 _00219 MIT1002_00220: MIT1002_00220 - Rod shape-determining protein MreB, at 243,801 to 244,844 _00220 Position (kb) 239 240 241 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 238.757 kb on + strand, within MIT1002_00217at 238.801 kb on - strand, within MIT1002_00217at 238.833 kb on + strand, within MIT1002_00217at 238.833 kb on - strand, within MIT1002_00217at 238.841 kb on + strand, within MIT1002_00217at 238.872 kb on + strand, within MIT1002_00217at 238.985 kb on - strand, within MIT1002_00217at 238.993 kb on + strand, within MIT1002_00217at 239.069 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.108 kb on - strand, within MIT1002_00217at 239.132 kb on + strand, within MIT1002_00217at 239.142 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.165 kb on - strand, within MIT1002_00217at 239.258 kb on - strandat 239.301 kb on - strandat 239.408 kb on - strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.470 kb on - strand, within MIT1002_00218at 239.510 kb on + strand, within MIT1002_00218at 239.556 kb on + strand, within MIT1002_00218at 239.564 kb on - strand, within MIT1002_00218at 239.592 kb on + strand, within MIT1002_00218at 239.600 kb on - strand, within MIT1002_00218at 239.650 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.689 kb on + strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.697 kb on - strand, within MIT1002_00218at 239.805 kb on + strandat 239.813 kb on + strandat 239.841 kb on + strandat 239.866 kb on + strandat 239.866 kb on + strandat 239.932 kb on - strandat 239.942 kb on + strandat 239.979 kb on + strandat 240.002 kb on + strandat 240.010 kb on + strandat 240.017 kb on - strandat 240.018 kb on - strandat 240.024 kb on - strandat 240.059 kb on - strandat 240.115 kb on + strandat 240.186 kb on + strand, within MIT1002_00219at 240.358 kb on + strand, within MIT1002_00219at 240.358 kb on + strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.370 kb on + strand, within MIT1002_00219at 240.444 kb on - strand, within MIT1002_00219at 240.484 kb on + strand, within MIT1002_00219at 240.497 kb on - strand, within MIT1002_00219at 240.497 kb on - strand, within MIT1002_00219at 240.527 kb on + strand, within MIT1002_00219at 240.527 kb on + strand, within MIT1002_00219at 240.543 kb on - strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.677 kb on - strand, within MIT1002_00219at 240.691 kb on + strand, within MIT1002_00219at 240.715 kb on + strand, within MIT1002_00219at 240.715 kb on + strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.725 kb on + strand, within MIT1002_00219at 240.878 kb on + strand, within MIT1002_00219at 240.879 kb on - strand, within MIT1002_00219at 240.891 kb on - strand, within MIT1002_00219at 240.921 kb on + strand, within MIT1002_00219at 240.929 kb on - strand, within MIT1002_00219at 240.953 kb on + strand, within MIT1002_00219at 240.960 kb on + strand, within MIT1002_00219at 240.964 kb on - strand, within MIT1002_00219at 240.970 kb on + strand, within MIT1002_00219at 241.017 kb on + strand, within MIT1002_00219at 241.099 kb on - strand, within MIT1002_00219at 241.248 kb on + strand, within MIT1002_00219at 241.266 kb on - strand, within MIT1002_00219at 241.269 kb on + strand, within MIT1002_00219at 241.269 kb on + strand, within MIT1002_00219at 241.276 kb on + strand, within MIT1002_00219at 241.343 kb on - strand, within MIT1002_00219at 241.379 kb on + strand, within MIT1002_00219at 241.382 kb on + strand, within MIT1002_00219at 241.490 kb on + strand, within MIT1002_00219at 241.497 kb on - strand, within MIT1002_00219at 241.520 kb on + strand, within MIT1002_00219at 241.535 kb on + strand, within MIT1002_00219at 241.557 kb on + strand, within MIT1002_00219at 241.574 kb on - strand, within MIT1002_00219at 241.611 kb on - strand, within MIT1002_00219at 241.616 kb on + strand, within MIT1002_00219at 241.616 kb on + strand, within MIT1002_00219at 241.626 kb on + strand, within MIT1002_00219at 241.626 kb on + strand, within MIT1002_00219at 241.633 kb on - strand, within MIT1002_00219at 241.713 kb on + strand, within MIT1002_00219at 241.718 kb on + strand, within MIT1002_00219at 241.728 kb on + strand, within MIT1002_00219at 241.728 kb on + strand, within MIT1002_00219at 241.787 kb on + strand, within MIT1002_00219at 241.837 kb on + strand, within MIT1002_00219at 241.845 kb on - strand, within MIT1002_00219at 241.850 kb on + strand, within MIT1002_00219at 241.937 kb on + strand, within MIT1002_00219at 241.953 kb on + strand, within MIT1002_00219at 241.961 kb on - strand, within MIT1002_00219at 241.979 kb on + strand, within MIT1002_00219at 242.001 kb on + strand, within MIT1002_00219at 242.027 kb on - strand, within MIT1002_00219at 242.032 kb on + strand, within MIT1002_00219at 242.136 kb on + strand, within MIT1002_00219at 242.136 kb on + strand, within MIT1002_00219at 242.149 kb on + strand, within MIT1002_00219at 242.183 kb on + strand, within MIT1002_00219at 242.290 kb on - strand, within MIT1002_00219at 242.298 kb on + strand, within MIT1002_00219at 242.300 kb on + strand, within MIT1002_00219at 242.300 kb on + strand, within MIT1002_00219at 242.300 kb on + strand, within MIT1002_00219at 242.323 kb on + strand, within MIT1002_00219at 242.323 kb on - strand, within MIT1002_00219at 242.368 kb on + strand, within MIT1002_00219at 242.404 kb on + strand, within MIT1002_00219at 242.411 kb on + strand, within MIT1002_00219at 242.411 kb on + strand, within MIT1002_00219at 242.411 kb on + strand, within MIT1002_00219at 242.448 kb on + strand, within MIT1002_00219at 242.456 kb on - strand, within MIT1002_00219at 242.463 kb on + strand, within MIT1002_00219at 242.523 kb on - strand, within MIT1002_00219at 242.628 kb on + strand, within MIT1002_00219at 242.628 kb on + strand, within MIT1002_00219at 242.637 kb on - strand, within MIT1002_00219at 242.647 kb on - strand, within MIT1002_00219at 242.709 kb on + strand, within MIT1002_00219at 242.733 kb on + strand, within MIT1002_00219at 242.748 kb on - strand, within MIT1002_00219at 242.791 kb on - strand, within MIT1002_00219at 242.905 kb on - strand, within MIT1002_00219at 242.983 kb on + strand, within MIT1002_00219at 242.991 kb on - strand, within MIT1002_00219at 243.175 kb on - strandat 243.181 kb on - strandat 243.279 kb on - strandat 243.292 kb on + strandat 243.364 kb on + strandat 243.364 kb on - strandat 243.389 kb on + strandat 243.394 kb on + strandat 243.441 kb on - strandat 243.482 kb on + strandat 243.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3
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238,757 + MIT1002_00217 0.31 -0.3
238,801 - MIT1002_00217 0.37 +0.5
238,833 + MIT1002_00217 0.42 +1.6
238,833 - MIT1002_00217 0.42 +1.3
238,841 + MIT1002_00217 0.43 +0.8
238,872 + MIT1002_00217 0.47 +4.1
238,985 - MIT1002_00217 0.62 -0.3
238,993 + MIT1002_00217 0.63 +0.4
239,069 + MIT1002_00217 0.73 +0.1
239,100 + MIT1002_00217 0.78 +0.4
239,100 + MIT1002_00217 0.78 +0.6
239,100 + MIT1002_00217 0.78 +0.5
239,100 + MIT1002_00217 0.78 +0.7
239,108 - MIT1002_00217 0.79 +0.1
239,132 + MIT1002_00217 0.82 +1.8
239,142 + MIT1002_00217 0.83 -0.3
239,157 + MIT1002_00217 0.85 -0.7
239,157 + MIT1002_00217 0.85 +1.1
239,157 + MIT1002_00217 0.85 +1.4
239,157 + MIT1002_00217 0.85 -1.4
239,165 - MIT1002_00217 0.86 -0.3
239,258 - -0.3
239,301 - -0.7
239,408 - MIT1002_00218 0.31 -0.5
239,447 + MIT1002_00218 0.39 -0.1
239,447 + MIT1002_00218 0.39 +0.9
239,470 - MIT1002_00218 0.43 +0.2
239,510 + MIT1002_00218 0.52 -1.8
239,556 + MIT1002_00218 0.61 +1.1
239,564 - MIT1002_00218 0.63 -0.2
239,592 + MIT1002_00218 0.68 +0.4
239,600 - MIT1002_00218 0.70 +0.9
239,650 + MIT1002_00218 0.80 +2.6
239,684 + MIT1002_00218 0.87 -0.5
239,684 + MIT1002_00218 0.87 -0.0
239,689 + MIT1002_00218 0.88 +0.3
239,692 - MIT1002_00218 0.89 -0.5
239,692 - MIT1002_00218 0.89 +0.1
239,692 - MIT1002_00218 0.89 +1.1
239,697 - MIT1002_00218 0.90 +1.0
239,805 + +0.4
239,813 + +0.5
239,841 + +1.0
239,866 + -0.7
239,866 + +1.7
239,932 - +0.2
239,942 + +0.6
239,979 + -0.4
240,002 + +0.4
240,010 + +3.1
240,017 - +0.5
240,018 - +0.3
240,024 - +0.7
240,059 - -1.1
240,115 + -0.0
240,186 + MIT1002_00219 0.12 +0.6
240,358 + MIT1002_00219 0.17 -0.8
240,358 + MIT1002_00219 0.17 +1.1
240,366 - MIT1002_00219 0.17 +0.8
240,366 - MIT1002_00219 0.17 +1.6
240,366 - MIT1002_00219 0.17 +1.1
240,366 - MIT1002_00219 0.17 +0.7
240,370 + MIT1002_00219 0.17 -0.0
240,444 - MIT1002_00219 0.19 +1.3
240,484 + MIT1002_00219 0.20 +1.1
240,497 - MIT1002_00219 0.20 -1.0
240,497 - MIT1002_00219 0.20 -0.2
240,527 + MIT1002_00219 0.21 +0.0
240,527 + MIT1002_00219 0.21 -1.0
240,543 - MIT1002_00219 0.22 -0.5
240,669 + MIT1002_00219 0.25 +0.7
240,669 + MIT1002_00219 0.25 -0.1
240,669 + MIT1002_00219 0.25 +0.6
240,677 - MIT1002_00219 0.25 +1.8
240,691 + MIT1002_00219 0.26 -0.4
240,715 + MIT1002_00219 0.26 +0.5
240,715 + MIT1002_00219 0.26 +0.6
240,723 - MIT1002_00219 0.26 +0.6
240,723 - MIT1002_00219 0.26 +0.7
240,723 - MIT1002_00219 0.26 +1.0
240,725 + MIT1002_00219 0.26 +1.3
240,878 + MIT1002_00219 0.31 +0.2
240,879 - MIT1002_00219 0.31 +0.7
240,891 - MIT1002_00219 0.31 +0.6
240,921 + MIT1002_00219 0.32 +0.5
240,929 - MIT1002_00219 0.32 -0.1
240,953 + MIT1002_00219 0.33 +0.4
240,960 + MIT1002_00219 0.33 -1.6
240,964 - MIT1002_00219 0.33 +0.6
240,970 + MIT1002_00219 0.33 +2.3
241,017 + MIT1002_00219 0.34 +1.0
241,099 - MIT1002_00219 0.37 +1.1
241,248 + MIT1002_00219 0.41 +1.0
241,266 - MIT1002_00219 0.41 -1.1
241,269 + MIT1002_00219 0.41 +0.2
241,269 + MIT1002_00219 0.41 +0.7
241,276 + MIT1002_00219 0.41 +1.1
241,343 - MIT1002_00219 0.43 +1.1
241,379 + MIT1002_00219 0.44 -0.6
241,382 + MIT1002_00219 0.44 +2.4
241,490 + MIT1002_00219 0.47 +3.8
241,497 - MIT1002_00219 0.47 +0.6
241,520 + MIT1002_00219 0.48 -0.0
241,535 + MIT1002_00219 0.48 -0.0
241,557 + MIT1002_00219 0.49 +1.0
241,574 - MIT1002_00219 0.49 +0.2
241,611 - MIT1002_00219 0.50 +2.8
241,616 + MIT1002_00219 0.51 -0.6
241,616 + MIT1002_00219 0.51 -0.3
241,626 + MIT1002_00219 0.51 -0.1
241,626 + MIT1002_00219 0.51 -0.9
241,633 - MIT1002_00219 0.51 +1.2
241,713 + MIT1002_00219 0.53 +0.5
241,718 + MIT1002_00219 0.53 +0.4
241,728 + MIT1002_00219 0.54 +0.2
241,728 + MIT1002_00219 0.54 +0.8
241,787 + MIT1002_00219 0.55 -0.2
241,837 + MIT1002_00219 0.57 -1.4
241,845 - MIT1002_00219 0.57 +1.2
241,850 + MIT1002_00219 0.57 -0.2
241,937 + MIT1002_00219 0.59 +0.6
241,953 + MIT1002_00219 0.60 +0.8
241,961 - MIT1002_00219 0.60 +1.1
241,979 + MIT1002_00219 0.60 -0.9
242,001 + MIT1002_00219 0.61 +0.8
242,027 - MIT1002_00219 0.62 -1.2
242,032 + MIT1002_00219 0.62 +0.6
242,136 + MIT1002_00219 0.65 +0.5
242,136 + MIT1002_00219 0.65 +2.4
242,149 + MIT1002_00219 0.65 +0.2
242,183 + MIT1002_00219 0.66 +2.4
242,290 - MIT1002_00219 0.69 +3.0
242,298 + MIT1002_00219 0.69 +0.1
242,300 + MIT1002_00219 0.69 +0.9
242,300 + MIT1002_00219 0.69 +0.8
242,300 + MIT1002_00219 0.69 +1.4
242,323 + MIT1002_00219 0.70 +0.8
242,323 - MIT1002_00219 0.70 +0.4
242,368 + MIT1002_00219 0.71 +1.4
242,404 + MIT1002_00219 0.72 +0.7
242,411 + MIT1002_00219 0.72 +1.5
242,411 + MIT1002_00219 0.72 -1.5
242,411 + MIT1002_00219 0.72 +1.0
242,448 + MIT1002_00219 0.73 +1.1
242,456 - MIT1002_00219 0.73 -0.2
242,463 + MIT1002_00219 0.73 +0.0
242,523 - MIT1002_00219 0.75 +0.9
242,628 + MIT1002_00219 0.78 -0.1
242,628 + MIT1002_00219 0.78 +0.2
242,637 - MIT1002_00219 0.78 +0.4
242,647 - MIT1002_00219 0.78 -0.4
242,709 + MIT1002_00219 0.80 +1.1
242,733 + MIT1002_00219 0.81 +1.3
242,748 - MIT1002_00219 0.81 +0.8
242,791 - MIT1002_00219 0.82 -1.5
242,905 - MIT1002_00219 0.85 -0.2
242,983 + MIT1002_00219 0.87 +0.7
242,991 - MIT1002_00219 0.88 +1.9
243,175 - -0.2
243,181 - -0.3
243,279 - -1.1
243,292 + +0.0
243,364 + +3.5
243,364 - +0.3
243,389 + +1.0
243,394 + +0.1
243,441 - -0.6
243,482 + -0.7
243,563 + -0.7

Or see this region's nucleotide sequence