Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00124 and MIT1002_00125 are separated by 137 nucleotides MIT1002_00125 and MIT1002_00126 are separated by 224 nucleotides MIT1002_00126 and MIT1002_00127 are separated by 150 nucleotides
MIT1002_00124: MIT1002_00124 - Outer membrane protein W precursor, at 134,427 to 135,098
_00124
MIT1002_00125: MIT1002_00125 - hypothetical protein, at 135,236 to 135,703
_00125
MIT1002_00126: MIT1002_00126 - hypothetical protein, at 135,928 to 136,236
_00126
MIT1002_00127: MIT1002_00127 - Blue light- and temperature-regulated antirepressor YcgF, at 136,387 to 137,574
_00127
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.948 kb on - strand, within MIT1002_00124 at 135.133 kb on + strand at 135.170 kb on + strand at 135.222 kb on + strand at 135.334 kb on + strand, within MIT1002_00125 at 135.334 kb on - strand, within MIT1002_00125 at 135.432 kb on + strand, within MIT1002_00125 at 135.447 kb on - strand, within MIT1002_00125 at 135.459 kb on - strand, within MIT1002_00125 at 135.465 kb on + strand, within MIT1002_00125 at 135.473 kb on - strand, within MIT1002_00125 at 135.557 kb on - strand, within MIT1002_00125 at 135.573 kb on + strand, within MIT1002_00125 at 135.595 kb on - strand, within MIT1002_00125 at 135.597 kb on + strand, within MIT1002_00125 at 135.680 kb on + strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.820 kb on + strand at 135.829 kb on - strand at 135.861 kb on - strand at 135.867 kb on - strand at 135.867 kb on - strand at 135.896 kb on + strand at 135.918 kb on + strand at 136.046 kb on + strand, within MIT1002_00126 at 136.054 kb on - strand, within MIT1002_00126 at 136.074 kb on - strand, within MIT1002_00126 at 136.092 kb on + strand, within MIT1002_00126 at 136.095 kb on - strand, within MIT1002_00126 at 136.149 kb on - strand, within MIT1002_00126 at 136.186 kb on - strand, within MIT1002_00126 at 136.308 kb on - strand at 136.352 kb on - strand at 136.526 kb on + strand, within MIT1002_00127 at 136.747 kb on + strand, within MIT1002_00127 at 136.870 kb on - strand, within MIT1002_00127 at 136.888 kb on + strand, within MIT1002_00127 at 136.896 kb on - strand, within MIT1002_00127 at 136.896 kb on - strand, within MIT1002_00127 at 136.914 kb on - strand, within MIT1002_00127 at 136.932 kb on + strand, within MIT1002_00127 at 136.935 kb on - strand, within MIT1002_00127 at 136.958 kb on - strand, within MIT1002_00127 at 136.974 kb on - strand, within MIT1002_00127 at 136.975 kb on + strand, within MIT1002_00127 at 137.052 kb on - strand, within MIT1002_00127 at 137.054 kb on + strand, within MIT1002_00127 at 137.054 kb on + strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.062 kb on - strand, within MIT1002_00127 at 137.064 kb on + strand, within MIT1002_00127 at 137.072 kb on - strand, within MIT1002_00127 at 137.072 kb on - strand, within MIT1002_00127 at 137.072 kb on - strand, within MIT1002_00127 at 137.086 kb on - strand, within MIT1002_00127 at 137.111 kb on + strand, within MIT1002_00127 at 137.221 kb on - strand, within MIT1002_00127 at 137.225 kb on + strand, within MIT1002_00127 at 137.230 kb on + strand, within MIT1002_00127 at 137.230 kb on + strand, within MIT1002_00127
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 134,948 - MIT1002_00124 0.78 +0.9 135,133 + +0.4 135,170 + -0.1 135,222 + +0.1 135,334 + MIT1002_00125 0.21 -1.0 135,334 - MIT1002_00125 0.21 -0.1 135,432 + MIT1002_00125 0.42 -0.1 135,447 - MIT1002_00125 0.45 -0.1 135,459 - MIT1002_00125 0.48 -1.0 135,465 + MIT1002_00125 0.49 +0.7 135,473 - MIT1002_00125 0.51 +0.5 135,557 - MIT1002_00125 0.69 -0.0 135,573 + MIT1002_00125 0.72 +0.4 135,595 - MIT1002_00125 0.77 +0.1 135,597 + MIT1002_00125 0.77 -1.7 135,680 + -0.5 135,688 - +0.0 135,688 - +0.2 135,820 + -0.3 135,829 - -0.1 135,861 - -3.2 135,867 - +0.6 135,867 - +0.3 135,896 + -0.1 135,918 + +0.6 136,046 + MIT1002_00126 0.38 +0.1 136,054 - MIT1002_00126 0.41 -0.1 136,074 - MIT1002_00126 0.47 -0.6 136,092 + MIT1002_00126 0.53 -0.2 136,095 - MIT1002_00126 0.54 +0.0 136,149 - MIT1002_00126 0.72 +0.0 136,186 - MIT1002_00126 0.83 -0.9 136,308 - +0.4 136,352 - +0.3 136,526 + MIT1002_00127 0.12 +1.1 136,747 + MIT1002_00127 0.30 +1.8 136,870 - MIT1002_00127 0.41 +0.6 136,888 + MIT1002_00127 0.42 +1.0 136,896 - MIT1002_00127 0.43 -2.8 136,896 - MIT1002_00127 0.43 +0.3 136,914 - MIT1002_00127 0.44 -0.0 136,932 + MIT1002_00127 0.46 +0.4 136,935 - MIT1002_00127 0.46 -0.3 136,958 - MIT1002_00127 0.48 -0.0 136,974 - MIT1002_00127 0.49 -0.4 136,975 + MIT1002_00127 0.49 -2.0 137,052 - MIT1002_00127 0.56 -0.5 137,054 + MIT1002_00127 0.56 -1.6 137,054 + MIT1002_00127 0.56 +0.3 137,062 - MIT1002_00127 0.57 +0.2 137,062 - MIT1002_00127 0.57 +0.6 137,062 - MIT1002_00127 0.57 -1.2 137,062 - MIT1002_00127 0.57 +1.5 137,062 - MIT1002_00127 0.57 +0.8 137,062 - MIT1002_00127 0.57 +0.9 137,064 + MIT1002_00127 0.57 +1.0 137,072 - MIT1002_00127 0.58 +1.8 137,072 - MIT1002_00127 0.58 +0.6 137,072 - MIT1002_00127 0.58 +0.9 137,086 - MIT1002_00127 0.59 -0.1 137,111 + MIT1002_00127 0.61 +2.0 137,221 - MIT1002_00127 0.70 -0.8 137,225 + MIT1002_00127 0.71 -1.0 137,230 + MIT1002_00127 0.71 +0.9 137,230 + MIT1002_00127 0.71 +0.8
Or see this region's nucleotide sequence