Experiment: monoculture; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00075 and MIT1002_00076 overlap by 11 nucleotides MIT1002_00076 and MIT1002_00077 are separated by 300 nucleotides MIT1002_00077 and MIT1002_00078 are separated by 103 nucleotides
MIT1002_00075: MIT1002_00075 - putative DNA-binding transcriptional regulator, at 80,425 to 81,618
_00075
MIT1002_00076: MIT1002_00076 - transcriptional regulator, y4mF family, at 81,608 to 81,898
_00076
MIT1002_00077: MIT1002_00077 - Malate-2H(+)/Na(+)-lactate antiporter, at 82,199 to 83,611
_00077
MIT1002_00078: MIT1002_00078 - Glycine betaine transporter OpuD, at 83,715 to 85,484
_00078
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 81.242 kb on - strand, within MIT1002_00075 at 81.266 kb on + strand, within MIT1002_00075 at 81.291 kb on + strand, within MIT1002_00075 at 81.303 kb on + strand, within MIT1002_00075 at 81.305 kb on - strand, within MIT1002_00075 at 81.311 kb on - strand, within MIT1002_00075 at 81.311 kb on - strand, within MIT1002_00075 at 81.342 kb on + strand, within MIT1002_00075 at 81.350 kb on - strand, within MIT1002_00075 at 81.397 kb on + strand, within MIT1002_00075 at 81.423 kb on + strand, within MIT1002_00075 at 81.470 kb on + strand, within MIT1002_00075 at 81.486 kb on + strand, within MIT1002_00075 at 81.598 kb on + strand at 81.606 kb on + strand at 81.606 kb on + strand at 81.659 kb on + strand, within MIT1002_00076 at 81.769 kb on + strand, within MIT1002_00076 at 81.811 kb on + strand, within MIT1002_00076 at 81.812 kb on + strand, within MIT1002_00076 at 81.820 kb on + strand, within MIT1002_00076 at 81.829 kb on + strand, within MIT1002_00076 at 82.032 kb on + strand at 82.045 kb on + strand at 82.045 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.107 kb on + strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.117 kb on + strand at 82.235 kb on - strand at 82.296 kb on + strand at 82.310 kb on - strand at 82.369 kb on - strand, within MIT1002_00077 at 82.408 kb on - strand, within MIT1002_00077 at 82.413 kb on - strand, within MIT1002_00077 at 82.413 kb on - strand, within MIT1002_00077 at 82.445 kb on + strand, within MIT1002_00077 at 82.512 kb on + strand, within MIT1002_00077 at 82.527 kb on - strand, within MIT1002_00077 at 82.569 kb on - strand, within MIT1002_00077 at 82.572 kb on + strand, within MIT1002_00077 at 82.610 kb on - strand, within MIT1002_00077 at 82.613 kb on + strand, within MIT1002_00077 at 82.616 kb on - strand, within MIT1002_00077 at 82.616 kb on - strand, within MIT1002_00077 at 82.634 kb on + strand, within MIT1002_00077 at 82.634 kb on + strand, within MIT1002_00077 at 82.634 kb on + strand, within MIT1002_00077 at 82.642 kb on - strand, within MIT1002_00077 at 82.642 kb on - strand, within MIT1002_00077 at 82.642 kb on - strand, within MIT1002_00077 at 82.642 kb on - strand, within MIT1002_00077 at 82.647 kb on - strand, within MIT1002_00077 at 82.678 kb on - strand, within MIT1002_00077 at 82.780 kb on + strand, within MIT1002_00077 at 82.792 kb on + strand, within MIT1002_00077 at 82.792 kb on + strand, within MIT1002_00077 at 82.792 kb on + strand, within MIT1002_00077 at 82.792 kb on + strand, within MIT1002_00077 at 82.797 kb on + strand, within MIT1002_00077 at 82.800 kb on - strand, within MIT1002_00077 at 82.800 kb on - strand, within MIT1002_00077 at 82.800 kb on - strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.802 kb on + strand, within MIT1002_00077 at 82.805 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.810 kb on - strand, within MIT1002_00077 at 82.903 kb on + strand, within MIT1002_00077 at 82.908 kb on + strand, within MIT1002_00077 at 82.911 kb on - strand, within MIT1002_00077 at 82.911 kb on - strand, within MIT1002_00077 at 82.916 kb on - strand, within MIT1002_00077 at 82.920 kb on + strand, within MIT1002_00077 at 82.926 kb on - strand, within MIT1002_00077 at 82.926 kb on - strand, within MIT1002_00077 at 82.928 kb on - strand, within MIT1002_00077 at 82.950 kb on + strand, within MIT1002_00077 at 82.950 kb on + strand, within MIT1002_00077 at 82.998 kb on + strand, within MIT1002_00077 at 82.998 kb on + strand, within MIT1002_00077 at 83.006 kb on - strand, within MIT1002_00077 at 83.006 kb on - strand, within MIT1002_00077 at 83.006 kb on - strand, within MIT1002_00077 at 83.038 kb on + strand, within MIT1002_00077 at 83.046 kb on - strand, within MIT1002_00077 at 83.064 kb on - strand, within MIT1002_00077 at 83.147 kb on - strand, within MIT1002_00077 at 83.171 kb on - strand, within MIT1002_00077 at 83.182 kb on + strand, within MIT1002_00077 at 83.194 kb on + strand, within MIT1002_00077 at 83.199 kb on + strand, within MIT1002_00077 at 83.207 kb on - strand, within MIT1002_00077 at 83.207 kb on - strand, within MIT1002_00077 at 83.208 kb on - strand, within MIT1002_00077 at 83.214 kb on - strand, within MIT1002_00077 at 83.216 kb on + strand, within MIT1002_00077 at 83.267 kb on + strand, within MIT1002_00077 at 83.323 kb on - strand, within MIT1002_00077 at 83.371 kb on + strand, within MIT1002_00077 at 83.374 kb on - strand, within MIT1002_00077 at 83.376 kb on - strand, within MIT1002_00077 at 83.380 kb on - strand, within MIT1002_00077 at 83.382 kb on - strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.387 kb on + strand, within MIT1002_00077 at 83.395 kb on - strand, within MIT1002_00077 at 83.395 kb on - strand, within MIT1002_00077 at 83.410 kb on - strand, within MIT1002_00077 at 83.466 kb on + strand, within MIT1002_00077 at 83.478 kb on + strand at 83.484 kb on - strand at 83.501 kb on + strand at 83.503 kb on - strand at 83.548 kb on - strand at 83.550 kb on - strand at 83.557 kb on + strand at 83.565 kb on - strand at 83.606 kb on + strand at 83.614 kb on - strand at 83.616 kb on + strand at 83.624 kb on - strand at 83.624 kb on - strand at 83.624 kb on - strand at 83.625 kb on - strand at 83.743 kb on + strand at 83.858 kb on + strand at 83.876 kb on - strand at 83.940 kb on + strand, within MIT1002_00078 at 83.947 kb on + strand, within MIT1002_00078 at 83.998 kb on + strand, within MIT1002_00078 at 84.089 kb on + strand, within MIT1002_00078 at 84.094 kb on + strand, within MIT1002_00078 at 84.099 kb on + strand, within MIT1002_00078 at 84.106 kb on + strand, within MIT1002_00078 at 84.112 kb on - strand, within MIT1002_00078 at 84.114 kb on - strand, within MIT1002_00078 at 84.176 kb on - strand, within MIT1002_00078 at 84.237 kb on - strand, within MIT1002_00078 at 84.247 kb on - strand, within MIT1002_00078 at 84.247 kb on - strand, within MIT1002_00078 at 84.249 kb on - strand, within MIT1002_00078 at 84.290 kb on - strand, within MIT1002_00078 at 84.320 kb on - strand, within MIT1002_00078 at 84.353 kb on - strand, within MIT1002_00078 at 84.353 kb on - strand, within MIT1002_00078 at 84.394 kb on - strand, within MIT1002_00078 at 84.459 kb on + strand, within MIT1002_00078 at 84.475 kb on + strand, within MIT1002_00078 at 84.476 kb on - strand, within MIT1002_00078
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 3 remove 81,242 - MIT1002_00075 0.68 +0.8 81,266 + MIT1002_00075 0.70 -0.3 81,291 + MIT1002_00075 0.73 +2.7 81,303 + MIT1002_00075 0.74 +0.7 81,305 - MIT1002_00075 0.74 -0.3 81,311 - MIT1002_00075 0.74 +0.1 81,311 - MIT1002_00075 0.74 -1.3 81,342 + MIT1002_00075 0.77 -0.5 81,350 - MIT1002_00075 0.77 +0.1 81,397 + MIT1002_00075 0.81 +0.9 81,423 + MIT1002_00075 0.84 -0.2 81,470 + MIT1002_00075 0.88 -0.5 81,486 + MIT1002_00075 0.89 +0.6 81,598 + +0.8 81,606 + -2.7 81,606 + -1.7 81,659 + MIT1002_00076 0.18 -1.4 81,769 + MIT1002_00076 0.55 -3.4 81,811 + MIT1002_00076 0.70 -1.9 81,812 + MIT1002_00076 0.70 -2.3 81,820 + MIT1002_00076 0.73 +0.2 81,829 + MIT1002_00076 0.76 -1.3 82,032 + -1.9 82,045 + +1.4 82,045 + -0.8 82,102 + -1.7 82,102 + -0.6 82,102 + -3.1 82,102 + -0.8 82,102 + -0.8 82,102 + +0.3 82,107 + +1.2 82,110 - -2.3 82,110 - -1.6 82,110 - -0.5 82,110 - -1.1 82,110 - +1.6 82,110 - +1.0 82,110 - +0.3 82,110 - +1.0 82,110 - -2.0 82,110 - +1.1 82,110 - +0.9 82,110 - -0.4 82,110 - -0.9 82,110 - +1.2 82,117 + +2.4 82,235 - -0.2 82,296 + +1.9 82,310 - -0.6 82,369 - MIT1002_00077 0.12 -0.9 82,408 - MIT1002_00077 0.15 -0.2 82,413 - MIT1002_00077 0.15 +1.6 82,413 - MIT1002_00077 0.15 -1.0 82,445 + MIT1002_00077 0.17 -1.9 82,512 + MIT1002_00077 0.22 -2.1 82,527 - MIT1002_00077 0.23 +0.3 82,569 - MIT1002_00077 0.26 +0.1 82,572 + MIT1002_00077 0.26 +0.8 82,610 - MIT1002_00077 0.29 +2.1 82,613 + MIT1002_00077 0.29 +1.1 82,616 - MIT1002_00077 0.30 +0.4 82,616 - MIT1002_00077 0.30 -2.2 82,634 + MIT1002_00077 0.31 +2.7 82,634 + MIT1002_00077 0.31 +0.9 82,634 + MIT1002_00077 0.31 +1.0 82,642 - MIT1002_00077 0.31 -0.0 82,642 - MIT1002_00077 0.31 +0.9 82,642 - MIT1002_00077 0.31 +0.1 82,642 - MIT1002_00077 0.31 -0.0 82,647 - MIT1002_00077 0.32 +0.1 82,678 - MIT1002_00077 0.34 -1.1 82,780 + MIT1002_00077 0.41 +0.6 82,792 + MIT1002_00077 0.42 -0.6 82,792 + MIT1002_00077 0.42 -1.7 82,792 + MIT1002_00077 0.42 +0.2 82,792 + MIT1002_00077 0.42 -1.3 82,797 + MIT1002_00077 0.42 -1.0 82,800 - MIT1002_00077 0.43 +0.0 82,800 - MIT1002_00077 0.43 -0.9 82,800 - MIT1002_00077 0.43 -2.2 82,802 + MIT1002_00077 0.43 -1.5 82,802 + MIT1002_00077 0.43 +1.0 82,802 + MIT1002_00077 0.43 -1.4 82,802 + MIT1002_00077 0.43 +4.2 82,802 + MIT1002_00077 0.43 -0.3 82,802 + MIT1002_00077 0.43 +0.2 82,802 + MIT1002_00077 0.43 -0.5 82,805 - MIT1002_00077 0.43 -0.0 82,810 - MIT1002_00077 0.43 -2.1 82,810 - MIT1002_00077 0.43 -0.6 82,810 - MIT1002_00077 0.43 +2.0 82,810 - MIT1002_00077 0.43 -0.0 82,810 - MIT1002_00077 0.43 +1.0 82,810 - MIT1002_00077 0.43 -0.2 82,903 + MIT1002_00077 0.50 +2.4 82,908 + MIT1002_00077 0.50 +0.3 82,911 - MIT1002_00077 0.50 +2.3 82,911 - MIT1002_00077 0.50 -1.7 82,916 - MIT1002_00077 0.51 -0.9 82,920 + MIT1002_00077 0.51 +1.0 82,926 - MIT1002_00077 0.51 +0.2 82,926 - MIT1002_00077 0.51 -0.4 82,928 - MIT1002_00077 0.52 -1.1 82,950 + MIT1002_00077 0.53 +0.7 82,950 + MIT1002_00077 0.53 -1.5 82,998 + MIT1002_00077 0.57 -0.8 82,998 + MIT1002_00077 0.57 -0.9 83,006 - MIT1002_00077 0.57 +0.8 83,006 - MIT1002_00077 0.57 -0.1 83,006 - MIT1002_00077 0.57 +0.0 83,038 + MIT1002_00077 0.59 -0.3 83,046 - MIT1002_00077 0.60 +0.1 83,064 - MIT1002_00077 0.61 -0.5 83,147 - MIT1002_00077 0.67 -0.3 83,171 - MIT1002_00077 0.69 -0.4 83,182 + MIT1002_00077 0.70 +1.5 83,194 + MIT1002_00077 0.70 -0.1 83,199 + MIT1002_00077 0.71 -1.4 83,207 - MIT1002_00077 0.71 -1.1 83,207 - MIT1002_00077 0.71 +0.6 83,208 - MIT1002_00077 0.71 +1.7 83,214 - MIT1002_00077 0.72 -0.0 83,216 + MIT1002_00077 0.72 +1.5 83,267 + MIT1002_00077 0.76 -0.4 83,323 - MIT1002_00077 0.80 +1.4 83,371 + MIT1002_00077 0.83 +0.3 83,374 - MIT1002_00077 0.83 +1.0 83,376 - MIT1002_00077 0.83 -1.5 83,380 - MIT1002_00077 0.84 -1.8 83,382 - MIT1002_00077 0.84 -0.0 83,387 + MIT1002_00077 0.84 +1.4 83,387 + MIT1002_00077 0.84 +0.3 83,387 + MIT1002_00077 0.84 +0.1 83,387 + MIT1002_00077 0.84 +0.3 83,387 + MIT1002_00077 0.84 -0.2 83,387 + MIT1002_00077 0.84 -0.9 83,395 - MIT1002_00077 0.85 -0.3 83,395 - MIT1002_00077 0.85 -0.0 83,410 - MIT1002_00077 0.86 +0.7 83,466 + MIT1002_00077 0.90 -1.9 83,478 + +0.6 83,484 - +1.0 83,501 + -1.0 83,503 - +0.1 83,548 - -0.2 83,550 - -0.5 83,557 + +1.1 83,565 - -0.6 83,606 + -0.7 83,614 - -0.9 83,616 + +1.0 83,624 - -1.0 83,624 - +0.2 83,624 - -0.2 83,625 - -0.7 83,743 + +0.1 83,858 + +0.5 83,876 - +1.4 83,940 + MIT1002_00078 0.13 -0.2 83,947 + MIT1002_00078 0.13 -0.3 83,998 + MIT1002_00078 0.16 -0.9 84,089 + MIT1002_00078 0.21 -1.8 84,094 + MIT1002_00078 0.21 -0.1 84,099 + MIT1002_00078 0.22 +0.4 84,106 + MIT1002_00078 0.22 +4.4 84,112 - MIT1002_00078 0.22 -0.1 84,114 - MIT1002_00078 0.23 +0.3 84,176 - MIT1002_00078 0.26 -0.1 84,237 - MIT1002_00078 0.29 -1.6 84,247 - MIT1002_00078 0.30 -0.5 84,247 - MIT1002_00078 0.30 +0.8 84,249 - MIT1002_00078 0.30 -0.8 84,290 - MIT1002_00078 0.32 -0.4 84,320 - MIT1002_00078 0.34 -0.3 84,353 - MIT1002_00078 0.36 -1.9 84,353 - MIT1002_00078 0.36 -1.4 84,394 - MIT1002_00078 0.38 -0.2 84,459 + MIT1002_00078 0.42 -0.5 84,475 + MIT1002_00078 0.43 -1.2 84,476 - MIT1002_00078 0.43 -0.8
Or see this region's nucleotide sequence