Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42395 and QEN71_RS42400 are separated by 71 nucleotides QEN71_RS42400 and QEN71_RS42405 are separated by 431 nucleotides
QEN71_RS42395: QEN71_RS42395 - nitrogenase molybdenum-iron protein alpha chain, at 557,369 to 558,832
_RS42395
QEN71_RS42400: QEN71_RS42400 - nitrogenase molybdenum-iron protein subunit beta, at 558,904 to 560,463
_RS42400
QEN71_RS42405: QEN71_RS42405 - AAA family ATPase, at 560,895 to 566,324
_RS42405
Position (kb) 558
559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 558.041 kb on + strand, within QEN71_RS42395 at 558.041 kb on + strand, within QEN71_RS42395 at 558.042 kb on - strand, within QEN71_RS42395 at 558.221 kb on + strand, within QEN71_RS42395 at 558.222 kb on - strand, within QEN71_RS42395 at 558.248 kb on + strand, within QEN71_RS42395 at 558.248 kb on + strand, within QEN71_RS42395 at 558.367 kb on + strand, within QEN71_RS42395 at 558.397 kb on - strand, within QEN71_RS42395 at 558.401 kb on - strand, within QEN71_RS42395 at 558.404 kb on + strand, within QEN71_RS42395 at 558.405 kb on - strand, within QEN71_RS42395 at 558.539 kb on + strand, within QEN71_RS42395 at 558.581 kb on + strand, within QEN71_RS42395 at 558.665 kb on + strand, within QEN71_RS42395 at 559.058 kb on - strand at 559.318 kb on + strand, within QEN71_RS42400 at 559.319 kb on - strand, within QEN71_RS42400 at 559.328 kb on - strand, within QEN71_RS42400 at 559.362 kb on + strand, within QEN71_RS42400 at 559.362 kb on + strand, within QEN71_RS42400 at 559.362 kb on + strand, within QEN71_RS42400 at 559.362 kb on + strand, within QEN71_RS42400 at 559.439 kb on - strand, within QEN71_RS42400 at 559.439 kb on - strand, within QEN71_RS42400 at 559.439 kb on - strand, within QEN71_RS42400 at 559.701 kb on + strand, within QEN71_RS42400 at 560.020 kb on + strand, within QEN71_RS42400 at 560.169 kb on + strand, within QEN71_RS42400 at 560.169 kb on + strand, within QEN71_RS42400 at 560.169 kb on + strand, within QEN71_RS42400 at 560.251 kb on + strand, within QEN71_RS42400 at 560.260 kb on + strand, within QEN71_RS42400 at 560.260 kb on + strand, within QEN71_RS42400 at 560.261 kb on - strand, within QEN71_RS42400 at 560.291 kb on + strand, within QEN71_RS42400 at 560.326 kb on + strand at 560.416 kb on - strand at 560.441 kb on - strand at 560.451 kb on + strand at 560.532 kb on + strand at 560.666 kb on - strand at 560.840 kb on + strand at 560.901 kb on - strand at 561.067 kb on + strand at 561.068 kb on - strand at 561.150 kb on + strand at 561.150 kb on + strand at 561.222 kb on + strand at 561.224 kb on + strand at 561.224 kb on + strand at 561.224 kb on + strand at 561.225 kb on - strand at 561.300 kb on + strand at 561.321 kb on + strand at 561.395 kb on - strand at 561.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 558,041 + QEN71_RS42395 0.46 +0.3 558,041 + QEN71_RS42395 0.46 -0.4 558,042 - QEN71_RS42395 0.46 +1.4 558,221 + QEN71_RS42395 0.58 -0.2 558,222 - QEN71_RS42395 0.58 -1.7 558,248 + QEN71_RS42395 0.60 +0.7 558,248 + QEN71_RS42395 0.60 -1.0 558,367 + QEN71_RS42395 0.68 -0.9 558,397 - QEN71_RS42395 0.70 +0.3 558,401 - QEN71_RS42395 0.70 -1.6 558,404 + QEN71_RS42395 0.71 +1.2 558,405 - QEN71_RS42395 0.71 +1.3 558,539 + QEN71_RS42395 0.80 -1.7 558,581 + QEN71_RS42395 0.83 +0.9 558,665 + QEN71_RS42395 0.89 -0.1 559,058 - -0.7 559,318 + QEN71_RS42400 0.27 -0.3 559,319 - QEN71_RS42400 0.27 +0.6 559,328 - QEN71_RS42400 0.27 +0.2 559,362 + QEN71_RS42400 0.29 +1.0 559,362 + QEN71_RS42400 0.29 +0.1 559,362 + QEN71_RS42400 0.29 +0.5 559,362 + QEN71_RS42400 0.29 +0.7 559,439 - QEN71_RS42400 0.34 -0.4 559,439 - QEN71_RS42400 0.34 +0.7 559,439 - QEN71_RS42400 0.34 +1.6 559,701 + QEN71_RS42400 0.51 +0.4 560,020 + QEN71_RS42400 0.72 -2.2 560,169 + QEN71_RS42400 0.81 -3.3 560,169 + QEN71_RS42400 0.81 -2.8 560,169 + QEN71_RS42400 0.81 -0.0 560,251 + QEN71_RS42400 0.86 +0.1 560,260 + QEN71_RS42400 0.87 +1.6 560,260 + QEN71_RS42400 0.87 -1.0 560,261 - QEN71_RS42400 0.87 -1.6 560,291 + QEN71_RS42400 0.89 +0.3 560,326 + -0.8 560,416 - +0.4 560,441 - -1.3 560,451 + +0.0 560,532 + +0.2 560,666 - -0.4 560,840 + -0.4 560,901 - +0.3 561,067 + -1.2 561,068 - +0.6 561,150 + -2.0 561,150 + -1.2 561,222 + +0.4 561,224 + +0.1 561,224 + -2.1 561,224 + -2.0 561,225 - -0.3 561,300 + -0.7 561,321 + -1.3 561,395 - +0.5 561,395 - -2.0
Or see this region's nucleotide sequence