Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42375 and QEN71_RS42380 are separated by 8 nucleotides QEN71_RS42380 and QEN71_RS42385 are separated by 170 nucleotides QEN71_RS42385 and QEN71_RS42390 are separated by 438 nucleotides
QEN71_RS42375: QEN71_RS42375 - zinc ribbon domain-containing protein, at 554,636 to 554,878
_RS42375
QEN71_RS42380: QEN71_RS42380 - ankyrin repeat domain-containing protein, at 554,887 to 555,198
_RS42380
QEN71_RS42385: QEN71_RS42385 - hypothetical protein, at 555,369 to 555,977
_RS42385
QEN71_RS42390: QEN71_RS42390 - nitrogenase iron protein, at 556,416 to 557,297
_RS42390
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.570 kb on - strand at 554.620 kb on - strand at 554.620 kb on - strand at 554.666 kb on + strand, within QEN71_RS42375 at 554.676 kb on + strand, within QEN71_RS42375 at 554.677 kb on - strand, within QEN71_RS42375 at 554.677 kb on - strand, within QEN71_RS42375 at 554.782 kb on + strand, within QEN71_RS42375 at 554.783 kb on - strand, within QEN71_RS42375 at 554.858 kb on + strand at 554.858 kb on + strand at 554.858 kb on + strand at 554.858 kb on + strand at 554.862 kb on + strand at 554.868 kb on + strand at 554.868 kb on + strand at 554.869 kb on - strand at 555.002 kb on - strand, within QEN71_RS42380 at 555.002 kb on - strand, within QEN71_RS42380 at 555.002 kb on - strand, within QEN71_RS42380 at 555.006 kb on + strand, within QEN71_RS42380 at 555.007 kb on - strand, within QEN71_RS42380 at 555.007 kb on - strand, within QEN71_RS42380 at 555.007 kb on - strand, within QEN71_RS42380 at 555.007 kb on - strand, within QEN71_RS42380 at 555.094 kb on + strand, within QEN71_RS42380 at 555.202 kb on + strand at 555.304 kb on + strand at 555.304 kb on + strand at 555.304 kb on + strand at 555.305 kb on - strand at 555.305 kb on - strand at 555.305 kb on - strand at 555.556 kb on + strand, within QEN71_RS42385 at 555.586 kb on + strand, within QEN71_RS42385 at 555.586 kb on + strand, within QEN71_RS42385 at 555.604 kb on + strand, within QEN71_RS42385 at 555.655 kb on + strand, within QEN71_RS42385 at 555.655 kb on + strand, within QEN71_RS42385 at 555.709 kb on + strand, within QEN71_RS42385 at 555.710 kb on - strand, within QEN71_RS42385 at 555.723 kb on + strand, within QEN71_RS42385 at 555.724 kb on - strand, within QEN71_RS42385 at 555.882 kb on - strand, within QEN71_RS42385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 554,570 - -2.1 554,620 - -1.1 554,620 - -1.0 554,666 + QEN71_RS42375 0.12 -0.2 554,676 + QEN71_RS42375 0.16 -0.1 554,677 - QEN71_RS42375 0.17 -1.1 554,677 - QEN71_RS42375 0.17 +1.7 554,782 + QEN71_RS42375 0.60 -0.7 554,783 - QEN71_RS42375 0.60 -0.5 554,858 + -0.4 554,858 + -0.9 554,858 + -0.1 554,858 + -0.8 554,862 + -2.0 554,868 + -0.2 554,868 + -0.6 554,869 - +0.9 555,002 - QEN71_RS42380 0.37 -0.3 555,002 - QEN71_RS42380 0.37 +0.1 555,002 - QEN71_RS42380 0.37 +0.2 555,006 + QEN71_RS42380 0.38 -0.5 555,007 - QEN71_RS42380 0.38 -0.3 555,007 - QEN71_RS42380 0.38 +0.3 555,007 - QEN71_RS42380 0.38 +0.2 555,007 - QEN71_RS42380 0.38 +0.2 555,094 + QEN71_RS42380 0.66 +0.2 555,202 + -0.5 555,304 + -1.8 555,304 + -2.2 555,304 + -1.9 555,305 - +0.3 555,305 - -0.5 555,305 - -2.5 555,556 + QEN71_RS42385 0.31 +0.5 555,586 + QEN71_RS42385 0.36 +1.9 555,586 + QEN71_RS42385 0.36 -2.4 555,604 + QEN71_RS42385 0.39 +0.2 555,655 + QEN71_RS42385 0.47 -0.4 555,655 + QEN71_RS42385 0.47 -0.4 555,709 + QEN71_RS42385 0.56 +0.3 555,710 - QEN71_RS42385 0.56 -0.3 555,723 + QEN71_RS42385 0.58 -0.4 555,724 - QEN71_RS42385 0.58 -1.4 555,882 - QEN71_RS42385 0.84 -1.8
Or see this region's nucleotide sequence