Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42245 and QEN71_RS42250 are separated by 66 nucleotides QEN71_RS42250 and QEN71_RS42255 are separated by 64 nucleotides QEN71_RS42255 and QEN71_RS42260 are separated by 30 nucleotides QEN71_RS42260 and QEN71_RS42265 are separated by 347 nucleotides
QEN71_RS42245: QEN71_RS42245 - nitrogenase cofactor biosynthesis protein NifB, at 530,170 to 531,774
_RS42245
QEN71_RS42250: QEN71_RS42250 - ferredoxin, at 531,841 to 532,035
_RS42250
QEN71_RS42255: QEN71_RS42255 - iron-sulfur cluster assembly accessory protein, at 532,100 to 532,498
_RS42255
QEN71_RS42260: QEN71_RS42260 - nitrogen fixation protein NifZ, at 532,529 to 532,972
_RS42260
QEN71_RS42265: QEN71_RS42265 - putative nitrogen fixation protein NifT, at 533,320 to 533,538
_RS42265
Position (kb) 532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.481 kb on + strand, within QEN71_RS42245 at 531.593 kb on + strand, within QEN71_RS42245 at 531.594 kb on - strand, within QEN71_RS42245 at 531.594 kb on - strand, within QEN71_RS42245 at 531.625 kb on + strand at 531.625 kb on + strand at 531.626 kb on - strand at 531.626 kb on - strand at 531.626 kb on - strand at 531.812 kb on - strand at 532.730 kb on + strand, within QEN71_RS42260 at 532.730 kb on + strand, within QEN71_RS42260 at 532.730 kb on + strand, within QEN71_RS42260 at 532.730 kb on + strand, within QEN71_RS42260 at 532.730 kb on + strand, within QEN71_RS42260 at 532.730 kb on + strand, within QEN71_RS42260 at 532.799 kb on + strand, within QEN71_RS42260 at 532.799 kb on + strand, within QEN71_RS42260 at 532.866 kb on + strand, within QEN71_RS42260 at 532.866 kb on + strand, within QEN71_RS42260 at 532.866 kb on + strand, within QEN71_RS42260 at 532.867 kb on - strand, within QEN71_RS42260 at 532.867 kb on - strand, within QEN71_RS42260 at 532.916 kb on - strand, within QEN71_RS42260 at 532.918 kb on + strand, within QEN71_RS42260 at 532.918 kb on + strand, within QEN71_RS42260 at 532.918 kb on + strand, within QEN71_RS42260 at 532.918 kb on + strand, within QEN71_RS42260 at 532.918 kb on + strand, within QEN71_RS42260 at 532.919 kb on - strand, within QEN71_RS42260 at 532.957 kb on + strand at 532.983 kb on - strand at 532.983 kb on - strand at 532.996 kb on + strand at 532.996 kb on + strand at 532.997 kb on - strand at 532.997 kb on - strand at 532.997 kb on - strand at 532.997 kb on - strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.030 kb on + strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.031 kb on - strand at 533.079 kb on + strand at 533.079 kb on + strand at 533.080 kb on - strand at 533.088 kb on - strand at 533.190 kb on + strand at 533.190 kb on + strand at 533.190 kb on + strand at 533.202 kb on + strand at 533.203 kb on - strand at 533.259 kb on + strand at 533.260 kb on - strand at 533.260 kb on - strand at 533.273 kb on + strand at 533.273 kb on + strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.274 kb on - strand at 533.316 kb on + strand at 533.316 kb on + strand at 533.316 kb on + strand at 533.317 kb on - strand at 533.354 kb on + strand, within QEN71_RS42265 at 533.355 kb on - strand, within QEN71_RS42265 at 533.365 kb on + strand, within QEN71_RS42265 at 533.366 kb on - strand, within QEN71_RS42265
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 531,481 + QEN71_RS42245 0.82 -0.3 531,593 + QEN71_RS42245 0.89 -0.6 531,594 - QEN71_RS42245 0.89 +1.6 531,594 - QEN71_RS42245 0.89 -1.0 531,625 + -1.0 531,625 + -0.0 531,626 - +0.3 531,626 - -0.9 531,626 - -1.2 531,812 - -2.3 532,730 + QEN71_RS42260 0.45 +0.2 532,730 + QEN71_RS42260 0.45 +0.4 532,730 + QEN71_RS42260 0.45 -0.8 532,730 + QEN71_RS42260 0.45 -0.9 532,730 + QEN71_RS42260 0.45 -0.8 532,730 + QEN71_RS42260 0.45 +0.2 532,799 + QEN71_RS42260 0.61 +2.4 532,799 + QEN71_RS42260 0.61 -0.9 532,866 + QEN71_RS42260 0.76 -0.4 532,866 + QEN71_RS42260 0.76 -0.6 532,866 + QEN71_RS42260 0.76 +0.7 532,867 - QEN71_RS42260 0.76 +0.3 532,867 - QEN71_RS42260 0.76 +2.2 532,916 - QEN71_RS42260 0.87 -0.0 532,918 + QEN71_RS42260 0.88 -0.7 532,918 + QEN71_RS42260 0.88 -0.5 532,918 + QEN71_RS42260 0.88 -0.7 532,918 + QEN71_RS42260 0.88 +0.7 532,918 + QEN71_RS42260 0.88 -0.6 532,919 - QEN71_RS42260 0.88 -2.2 532,957 + +0.3 532,983 - -0.7 532,983 - -2.1 532,996 + -1.0 532,996 + +0.9 532,997 - -0.4 532,997 - +0.6 532,997 - -0.7 532,997 - -0.3 533,030 + +0.2 533,030 + -0.5 533,030 + +0.9 533,030 + +0.8 533,030 + -0.2 533,030 + +0.0 533,030 + -1.9 533,030 + -0.5 533,030 + -0.6 533,031 - +1.2 533,031 - -0.3 533,031 - +0.8 533,031 - +1.2 533,031 - +0.7 533,031 - +0.2 533,031 - -0.2 533,079 + +0.4 533,079 + -0.3 533,080 - -0.5 533,088 - -0.2 533,190 + +0.2 533,190 + -1.0 533,190 + -1.5 533,202 + +2.4 533,203 - -0.9 533,259 + +0.8 533,260 - -1.3 533,260 - -0.9 533,273 + -0.9 533,273 + +0.6 533,274 - -0.3 533,274 - -1.2 533,274 - -0.5 533,274 - -1.1 533,274 - -0.8 533,274 - -1.6 533,316 + -1.3 533,316 + -1.5 533,316 + +0.6 533,317 - +0.1 533,354 + QEN71_RS42265 0.16 +0.3 533,355 - QEN71_RS42265 0.16 -0.2 533,365 + QEN71_RS42265 0.21 +1.0 533,366 - QEN71_RS42265 0.21 -0.5
Or see this region's nucleotide sequence