Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36065 and QEN71_RS36070 are separated by 94 nucleotides QEN71_RS36070 and QEN71_RS36075 are separated by 2 nucleotides
QEN71_RS36065: QEN71_RS36065 - sugar ABC transporter substrate-binding protein, at 1,475,674 to 1,476,783
_RS36065
QEN71_RS36070: QEN71_RS36070 - class II aldolase/adducin family protein, at 1,476,878 to 1,477,552
_RS36070
QEN71_RS36075: QEN71_RS36075 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,477,555 to 1,478,643
_RS36075
Position (kb) 1476
1477
1478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1476.156 kb on + strand, within QEN71_RS36065 at 1476.340 kb on - strand, within QEN71_RS36065 at 1476.803 kb on - strand at 1476.846 kb on + strand at 1476.985 kb on - strand, within QEN71_RS36070 at 1477.189 kb on - strand, within QEN71_RS36070 at 1477.189 kb on - strand, within QEN71_RS36070 at 1477.189 kb on - strand, within QEN71_RS36070 at 1477.189 kb on - strand, within QEN71_RS36070 at 1477.189 kb on - strand, within QEN71_RS36070 at 1477.205 kb on - strand, within QEN71_RS36070 at 1478.064 kb on - strand, within QEN71_RS36075 at 1478.099 kb on + strand, within QEN71_RS36075 at 1478.100 kb on - strand, within QEN71_RS36075 at 1478.218 kb on + strand, within QEN71_RS36075 at 1478.219 kb on - strand, within QEN71_RS36075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,476,156 + QEN71_RS36065 0.43 +1.2 1,476,340 - QEN71_RS36065 0.60 -0.1 1,476,803 - -0.4 1,476,846 + +0.7 1,476,985 - QEN71_RS36070 0.16 -1.0 1,477,189 - QEN71_RS36070 0.46 -0.4 1,477,189 - QEN71_RS36070 0.46 -1.0 1,477,189 - QEN71_RS36070 0.46 -1.5 1,477,189 - QEN71_RS36070 0.46 +1.9 1,477,189 - QEN71_RS36070 0.46 +0.3 1,477,205 - QEN71_RS36070 0.48 -0.3 1,478,064 - QEN71_RS36075 0.47 -1.9 1,478,099 + QEN71_RS36075 0.50 -0.9 1,478,100 - QEN71_RS36075 0.50 -0.3 1,478,218 + QEN71_RS36075 0.61 +0.6 1,478,219 - QEN71_RS36075 0.61 -1.0
Or see this region's nucleotide sequence