Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33975 and QEN71_RS33980 are separated by 104 nucleotides QEN71_RS33980 and QEN71_RS33985 are separated by 45 nucleotides
QEN71_RS33975: QEN71_RS33975 - aspartate aminotransferase family protein, at 937,701 to 939,152
_RS33975
QEN71_RS33980: QEN71_RS33980 - CoA ester lyase, at 939,257 to 940,234
_RS33980
QEN71_RS33985: QEN71_RS33985 - phosphoenolpyruvate carboxylase, at 940,280 to 943,192
_RS33985
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.272 kb on - strand, within QEN71_RS33975 at 938.661 kb on + strand, within QEN71_RS33975 at 938.662 kb on - strand, within QEN71_RS33975 at 938.703 kb on + strand, within QEN71_RS33975 at 938.703 kb on + strand, within QEN71_RS33975 at 939.108 kb on + strand at 939.109 kb on - strand at 939.109 kb on - strand at 939.245 kb on + strand at 939.259 kb on - strand at 939.259 kb on - strand at 939.265 kb on + strand at 939.265 kb on + strand at 939.266 kb on - strand at 939.486 kb on + strand, within QEN71_RS33980 at 939.487 kb on - strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.523 kb on - strand, within QEN71_RS33980 at 939.733 kb on - strand, within QEN71_RS33980 at 939.733 kb on - strand, within QEN71_RS33980 at 939.979 kb on - strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 940.234 kb on + strand at 940.234 kb on + strand at 940.235 kb on - strand at 940.249 kb on - strand at 940.540 kb on + strand at 940.896 kb on + strand, within QEN71_RS33985 at 940.896 kb on + strand, within QEN71_RS33985 at 940.896 kb on + strand, within QEN71_RS33985 at 940.932 kb on + strand, within QEN71_RS33985 at 941.023 kb on + strand, within QEN71_RS33985 at 941.023 kb on + strand, within QEN71_RS33985 at 941.023 kb on + strand, within QEN71_RS33985 at 941.024 kb on - strand, within QEN71_RS33985 at 941.024 kb on - strand, within QEN71_RS33985 at 941.024 kb on - strand, within QEN71_RS33985 at 941.024 kb on - strand, within QEN71_RS33985 at 941.061 kb on + strand, within QEN71_RS33985
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 938,272 - QEN71_RS33975 0.39 -0.0 938,661 + QEN71_RS33975 0.66 -1.7 938,662 - QEN71_RS33975 0.66 -1.4 938,703 + QEN71_RS33975 0.69 +0.1 938,703 + QEN71_RS33975 0.69 +0.6 939,108 + -1.1 939,109 - +1.1 939,109 - -0.2 939,245 + -1.0 939,259 - -0.4 939,259 - -1.2 939,265 + -0.6 939,265 + +0.1 939,266 - -1.4 939,486 + QEN71_RS33980 0.23 -2.4 939,487 - QEN71_RS33980 0.24 +0.6 939,522 + QEN71_RS33980 0.27 -2.8 939,522 + QEN71_RS33980 0.27 -0.3 939,522 + QEN71_RS33980 0.27 +0.1 939,523 - QEN71_RS33980 0.27 -1.4 939,733 - QEN71_RS33980 0.49 -1.2 939,733 - QEN71_RS33980 0.49 +0.2 939,979 - QEN71_RS33980 0.74 -0.1 939,984 + QEN71_RS33980 0.74 -0.1 939,984 + QEN71_RS33980 0.74 +2.1 939,984 + QEN71_RS33980 0.74 +0.6 939,984 + QEN71_RS33980 0.74 -0.3 939,985 - QEN71_RS33980 0.74 -1.0 939,985 - QEN71_RS33980 0.74 -1.2 939,985 - QEN71_RS33980 0.74 -0.6 939,985 - QEN71_RS33980 0.74 +0.1 939,985 - QEN71_RS33980 0.74 -1.7 939,985 - QEN71_RS33980 0.74 -0.4 940,234 + -1.6 940,234 + +0.2 940,235 - -0.6 940,249 - -2.6 940,540 + -0.4 940,896 + QEN71_RS33985 0.21 -0.1 940,896 + QEN71_RS33985 0.21 +0.6 940,896 + QEN71_RS33985 0.21 -1.3 940,932 + QEN71_RS33985 0.22 -0.6 941,023 + QEN71_RS33985 0.26 +0.4 941,023 + QEN71_RS33985 0.26 -0.2 941,023 + QEN71_RS33985 0.26 -0.4 941,024 - QEN71_RS33985 0.26 -0.7 941,024 - QEN71_RS33985 0.26 +0.3 941,024 - QEN71_RS33985 0.26 +0.1 941,024 - QEN71_RS33985 0.26 -1.9 941,061 + QEN71_RS33985 0.27 +0.6
Or see this region's nucleotide sequence