Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33660 and QEN71_RS33665 overlap by 55 nucleotides QEN71_RS33665 and QEN71_RS33670 are separated by 333 nucleotides
QEN71_RS33660: QEN71_RS33660 - KUP/HAK/KT family potassium transporter, at 868,618 to 870,534
_RS33660
QEN71_RS33665: QEN71_RS33665 - EAL domain-containing protein, at 870,480 to 873,278
_RS33665
QEN71_RS33670: QEN71_RS33670 - excinuclease ABC subunit UvrA, at 873,612 to 876,275
_RS33670
Position (kb) 870
871
872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 869.665 kb on + strand, within QEN71_RS33660 at 870.092 kb on - strand, within QEN71_RS33660 at 870.112 kb on - strand, within QEN71_RS33660 at 870.112 kb on - strand, within QEN71_RS33660 at 870.257 kb on - strand, within QEN71_RS33660 at 870.360 kb on + strand at 870.360 kb on + strand at 870.361 kb on - strand at 870.361 kb on - strand at 870.482 kb on - strand at 870.482 kb on - strand at 870.482 kb on - strand at 870.812 kb on + strand, within QEN71_RS33665 at 870.812 kb on + strand, within QEN71_RS33665 at 870.814 kb on + strand, within QEN71_RS33665 at 870.815 kb on - strand, within QEN71_RS33665 at 870.815 kb on - strand, within QEN71_RS33665 at 870.886 kb on - strand, within QEN71_RS33665 at 870.942 kb on - strand, within QEN71_RS33665 at 871.024 kb on - strand, within QEN71_RS33665 at 871.024 kb on - strand, within QEN71_RS33665 at 871.246 kb on + strand, within QEN71_RS33665 at 871.246 kb on + strand, within QEN71_RS33665 at 871.378 kb on + strand, within QEN71_RS33665 at 871.397 kb on - strand, within QEN71_RS33665 at 871.588 kb on + strand, within QEN71_RS33665 at 871.588 kb on + strand, within QEN71_RS33665 at 871.846 kb on + strand, within QEN71_RS33665 at 871.876 kb on - strand, within QEN71_RS33665 at 871.942 kb on + strand, within QEN71_RS33665 at 872.013 kb on + strand, within QEN71_RS33665 at 872.013 kb on + strand, within QEN71_RS33665 at 872.062 kb on - strand, within QEN71_RS33665 at 872.062 kb on - strand, within QEN71_RS33665 at 872.062 kb on - strand, within QEN71_RS33665 at 872.125 kb on + strand, within QEN71_RS33665 at 872.126 kb on - strand, within QEN71_RS33665 at 872.126 kb on - strand, within QEN71_RS33665 at 872.126 kb on - strand, within QEN71_RS33665 at 872.293 kb on + strand, within QEN71_RS33665 at 872.293 kb on + strand, within QEN71_RS33665 at 872.294 kb on - strand, within QEN71_RS33665 at 872.512 kb on + strand, within QEN71_RS33665 at 872.512 kb on + strand, within QEN71_RS33665 at 872.513 kb on - strand, within QEN71_RS33665 at 872.513 kb on - strand, within QEN71_RS33665 at 872.513 kb on - strand, within QEN71_RS33665 at 872.513 kb on - strand, within QEN71_RS33665 at 872.513 kb on - strand, within QEN71_RS33665 at 872.971 kb on + strand, within QEN71_RS33665 at 872.972 kb on - strand, within QEN71_RS33665 at 872.972 kb on - strand, within QEN71_RS33665 at 873.022 kb on + strand at 873.031 kb on - strand at 873.294 kb on + strand at 873.294 kb on + strand at 873.342 kb on + strand at 873.343 kb on - strand at 873.343 kb on - strand at 873.497 kb on + strand at 873.497 kb on + strand at 873.564 kb on + strand at 873.644 kb on + strand at 873.822 kb on + strand at 873.822 kb on + strand at 873.823 kb on - strand at 873.999 kb on + strand, within QEN71_RS33670 at 873.999 kb on + strand, within QEN71_RS33670 at 873.999 kb on + strand, within QEN71_RS33670 at 873.999 kb on + strand, within QEN71_RS33670 at 874.110 kb on + strand, within QEN71_RS33670 at 874.110 kb on + strand, within QEN71_RS33670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 869,665 + QEN71_RS33660 0.55 -0.1 870,092 - QEN71_RS33660 0.77 -1.0 870,112 - QEN71_RS33660 0.78 -0.6 870,112 - QEN71_RS33660 0.78 -1.1 870,257 - QEN71_RS33660 0.85 -1.7 870,360 + -0.9 870,360 + -2.9 870,361 - +1.3 870,361 - +0.5 870,482 - +0.4 870,482 - +2.5 870,482 - -0.6 870,812 + QEN71_RS33665 0.12 -1.2 870,812 + QEN71_RS33665 0.12 -0.8 870,814 + QEN71_RS33665 0.12 -0.1 870,815 - QEN71_RS33665 0.12 +0.3 870,815 - QEN71_RS33665 0.12 +0.1 870,886 - QEN71_RS33665 0.15 -0.9 870,942 - QEN71_RS33665 0.17 -2.9 871,024 - QEN71_RS33665 0.19 +0.2 871,024 - QEN71_RS33665 0.19 -0.8 871,246 + QEN71_RS33665 0.27 -0.7 871,246 + QEN71_RS33665 0.27 -2.2 871,378 + QEN71_RS33665 0.32 +0.2 871,397 - QEN71_RS33665 0.33 +1.5 871,588 + QEN71_RS33665 0.40 -0.2 871,588 + QEN71_RS33665 0.40 +1.4 871,846 + QEN71_RS33665 0.49 -0.1 871,876 - QEN71_RS33665 0.50 -0.7 871,942 + QEN71_RS33665 0.52 -0.3 872,013 + QEN71_RS33665 0.55 -0.1 872,013 + QEN71_RS33665 0.55 -1.1 872,062 - QEN71_RS33665 0.57 +0.3 872,062 - QEN71_RS33665 0.57 -1.5 872,062 - QEN71_RS33665 0.57 -0.1 872,125 + QEN71_RS33665 0.59 +0.4 872,126 - QEN71_RS33665 0.59 -0.3 872,126 - QEN71_RS33665 0.59 -0.2 872,126 - QEN71_RS33665 0.59 -0.3 872,293 + QEN71_RS33665 0.65 -0.9 872,293 + QEN71_RS33665 0.65 +1.1 872,294 - QEN71_RS33665 0.65 -2.1 872,512 + QEN71_RS33665 0.73 -0.8 872,512 + QEN71_RS33665 0.73 -0.3 872,513 - QEN71_RS33665 0.73 -0.8 872,513 - QEN71_RS33665 0.73 +0.4 872,513 - QEN71_RS33665 0.73 +0.6 872,513 - QEN71_RS33665 0.73 -0.4 872,513 - QEN71_RS33665 0.73 -0.3 872,971 + QEN71_RS33665 0.89 -0.7 872,972 - QEN71_RS33665 0.89 +0.1 872,972 - QEN71_RS33665 0.89 +0.5 873,022 + +0.3 873,031 - -1.2 873,294 + -0.9 873,294 + -1.1 873,342 + +0.6 873,343 - +0.6 873,343 - +1.0 873,497 + +1.1 873,497 + -1.2 873,564 + -0.1 873,644 + -0.0 873,822 + +0.1 873,822 + -0.8 873,823 - -1.3 873,999 + QEN71_RS33670 0.15 -0.8 873,999 + QEN71_RS33670 0.15 -0.5 873,999 + QEN71_RS33670 0.15 +1.0 873,999 + QEN71_RS33670 0.15 -0.1 874,110 + QEN71_RS33670 0.19 +0.6 874,110 + QEN71_RS33670 0.19 +0.0
Or see this region's nucleotide sequence