Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32595 and QEN71_RS32600 are separated by 125 nucleotides QEN71_RS32600 and QEN71_RS32605 are separated by 145 nucleotides QEN71_RS32605 and QEN71_RS32610 are separated by 62 nucleotides
QEN71_RS32595: QEN71_RS32595 - GntR family transcriptional regulator, at 649,143 to 649,838
_RS32595
QEN71_RS32600: QEN71_RS32600 - nuclear transport factor 2 family protein, at 649,964 to 650,443
_RS32600
QEN71_RS32605: QEN71_RS32605 - TIGR00366 family protein, at 650,589 to 651,911
_RS32605
QEN71_RS32610: QEN71_RS32610 - histone deacetylase family protein, at 651,974 to 653,008
_RS32610
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 649.850 kb on - strand at 649.850 kb on - strand at 649.861 kb on + strand at 650.531 kb on - strand at 650.557 kb on + strand at 650.557 kb on + strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.558 kb on - strand at 650.601 kb on - strand at 650.615 kb on + strand at 650.615 kb on + strand at 650.634 kb on + strand at 650.634 kb on + strand at 651.019 kb on - strand, within QEN71_RS32605 at 651.019 kb on - strand, within QEN71_RS32605 at 651.227 kb on - strand, within QEN71_RS32605 at 651.357 kb on + strand, within QEN71_RS32605 at 651.462 kb on + strand, within QEN71_RS32605 at 651.462 kb on + strand, within QEN71_RS32605 at 651.463 kb on - strand, within QEN71_RS32605 at 651.900 kb on + strand at 651.901 kb on - strand at 651.901 kb on - strand at 651.948 kb on - strand at 651.948 kb on - strand at 651.948 kb on - strand at 651.951 kb on + strand at 651.965 kb on + strand at 651.966 kb on - strand at 651.986 kb on + strand at 651.986 kb on + strand at 651.986 kb on + strand at 651.987 kb on - strand at 651.988 kb on + strand at 651.988 kb on + strand at 651.989 kb on - strand at 651.989 kb on - strand at 652.131 kb on - strand, within QEN71_RS32610 at 652.145 kb on + strand, within QEN71_RS32610 at 652.146 kb on - strand, within QEN71_RS32610 at 652.146 kb on - strand, within QEN71_RS32610 at 652.382 kb on - strand, within QEN71_RS32610 at 652.463 kb on + strand, within QEN71_RS32610 at 652.464 kb on - strand, within QEN71_RS32610 at 652.476 kb on - strand, within QEN71_RS32610 at 652.482 kb on - strand, within QEN71_RS32610 at 652.482 kb on - strand, within QEN71_RS32610 at 652.624 kb on - strand, within QEN71_RS32610 at 652.641 kb on + strand, within QEN71_RS32610 at 652.825 kb on + strand, within QEN71_RS32610
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 649,850 - +1.1 649,850 - -0.4 649,861 + +1.2 650,531 - +0.3 650,557 + +3.7 650,557 + +1.4 650,558 - -0.2 650,558 - -0.6 650,558 - -0.3 650,558 - -1.1 650,601 - +0.1 650,615 + -0.4 650,615 + -0.5 650,634 + -0.8 650,634 + -1.7 651,019 - QEN71_RS32605 0.33 +1.0 651,019 - QEN71_RS32605 0.33 -0.0 651,227 - QEN71_RS32605 0.48 +4.3 651,357 + QEN71_RS32605 0.58 +0.4 651,462 + QEN71_RS32605 0.66 +1.5 651,462 + QEN71_RS32605 0.66 -0.9 651,463 - QEN71_RS32605 0.66 -0.2 651,900 + -0.1 651,901 - +0.2 651,901 - -0.3 651,948 - -0.6 651,948 - -1.2 651,948 - +0.8 651,951 + -0.4 651,965 + -0.9 651,966 - -0.6 651,986 + -0.1 651,986 + -2.8 651,986 + -0.2 651,987 - -0.1 651,988 + +0.8 651,988 + +0.1 651,989 - -0.4 651,989 - -0.9 652,131 - QEN71_RS32610 0.15 +0.2 652,145 + QEN71_RS32610 0.17 +0.1 652,146 - QEN71_RS32610 0.17 +0.1 652,146 - QEN71_RS32610 0.17 -0.8 652,382 - QEN71_RS32610 0.39 -0.4 652,463 + QEN71_RS32610 0.47 -0.5 652,464 - QEN71_RS32610 0.47 -0.7 652,476 - QEN71_RS32610 0.49 +1.2 652,482 - QEN71_RS32610 0.49 +0.4 652,482 - QEN71_RS32610 0.49 -0.8 652,624 - QEN71_RS32610 0.63 +0.8 652,641 + QEN71_RS32610 0.64 -0.0 652,825 + QEN71_RS32610 0.82 -1.4
Or see this region's nucleotide sequence